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5 protocols using tmr dextran 70 kda

1

Quantifying Macropinocytosis in Tumor Tissues

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To detect and quantify macropinocytosis in tumor tissues, ex vivo labeling of macropinosomes in tumor tissues was performed. Human liver cancer tissues obtained from surgical resections were dissected into approximately 3 mm lengths and immersed in DMEM containing 10% FBS and 1% P/S at 37 °C/5% CO2. Next, after 24 h of treatment with 10 μM sorafenib, tissues were exposed to TMR-dextran 70 kDa (0.5 mg/ml; Thermo Fisher Scientific, Waltham, MA, USA) for 1 h. Prior to detection of macropinocytosis in tumor xenograft tissues (Huh7 and SK-Hep1) isolated from mice, animals received daily intraperitoneal (i.p.) injections of vehicle containing amiloride (5 mg/kg) and/or sorafenib (5 mg/kg) for 3 days; the injections were given when the volume of Huh7 and SK-Hep1 xenograft tumors reached about 300 mm3. Tumor tissues were harvested and cut into slices. Tissues were immersed in 1 mg/ml of TMR-dextran 70 kDa for 1 h, washed three times in phosphate-buffered saline (PBS), and frozen in optimal cutting temperature compound. The frozen tumor tissues were processed and macropinocytosis was quantified as described previously [19 (link)]. Orthotopic liver tumor tissues from RIL-175 mice were harvested at the experimental endpoint, sliced, and processed as described above.
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2

Immunoblotting and Immunostaining Protocols

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Total β-catenin antibody (1:1000) was purchased from Invitrogen (712,700, 1:1000) was obtained from Cell Signaling Technologies. CD63 antibody was obtained from Abcam (ab59479). Antibodies against Sodium Potassium ATPase antibody (ab76020, 1:1000), and secondary antibodies for immunostaining for cells (ab150084, ab150117) (1:300) were obtained from Abcam. Secondary antibodies for immunostaining arrays (A-11001, A-11011 were obtained from Invitrogen). Ouabain (1076) was purchased from Selleckchem. TMR-dextran 70 kDa was obtained from ThermoFisher (D1818).
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Quantification of Macropinocytosis in Cancer Cells

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Cancer cells were treated with TMR-dextran 70 kDa (0.5 mg/mL) for 1 h or with DQ-BSA (0.5 mg/mL; Thermo Fisher Scientific) for 4 h. Cancer cells were washed three times with PBS and then fixed with 4% paraformaldehyde. After fixation, cells were mounted in mounting solution containing DAPI (Vector Laboratories, Burlingame, CA, USA). Macropinocytosis was quantified as described previously [19 (link)]. To inhibit TMR-dextran uptake or lysosomal degradation of DQ-BSA, cells were pretreated by exposure to a low temperature (4 °C) or to NH4Cl (Sigma) for 15 min before addition of chemicals. The number of labeled macropinosomes was analyzed using the ‘Analyze Particle’ tool in Image J (a Java-based image processing program), and fluorescence intensity was determined by measuring the integrated signal density/cell in DQ-BSA-treated cells.
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Comprehensive Antibodies and Reagents Protocol

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Total β-catenin antibody (1:1,000) was purchased from Invitrogen (712700), glyceraldehyde-3-phosphate dehydrogenase antibody (1:1,000) and FAK antibody (1:1,000, 3285) were obtained from Cell Signaling Technologies, anti-ATP6V0a3 antibody (1:500) was obtained from Novus (nbp1–89333, 1:1,000). CD63 antibody was obtained from Abcam.
Antibodies against Pak1 (ab131522), Ras (ab52939), GSK3 (ab93926, 1:4000), and secondary antibodies for immunostaining for cells (ab150120, ab150084, ab150117, ab150081) (1:300) were obtained from Abcam. Antibody against the focal adhesion protein Tes (HPA018123, 1:100) was obtained from Atlas antibodies. Secondary antibodies for immunostaining arrays (A-11001, A-11011 were obtained from Invitrogen). HRP-linked secondary antibodies (7076, 7074 at 1:5000 (Cell Signaling) were used for Western blots and analyzed with an iBright Imaging system. EIPA (A3085), and LiCl (L4408), were obtained from Sigma. Baf (S1413) and PF-00562271 (FAK inhibitor, S2672) were purchased from Selleckchem. TMR- dextran 70 kDa was obtained from ThermoFisher (D1818). PMA (1201) was purchased from TOCRIS.
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5

Cell Signaling Pathway Antibody Protocol

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Total β-catenin antibody (1:1000) was purchased from Invitrogen (712700), glyceraldehyde-3-phosphate dehydrogenase antibody (1:1000) and FAK antibody (1:1000, 3285) were obtained from Cell Signaling Technologies, anti-ATP6V0a3 antibody (1:500) was obtained from Novus (nbp1-89333, 1:1000). CD63 antibody was obtained from Abcam.
Antibodies against Pak1 (ab131522), Ras (ab52939), GSK3 (ab93926, 1:4000), and secondary antibodies for immunostaining for cells (ab150120, ab150084, ab150117, ab150081) (1:300) were obtained from Abcam. Antibody against the FA protein Tes (HPA018123, 1:100) was obtained from Atlas antibodies. Secondary antibodies for immunostaining arrays (A-11001, A-11011 were obtained from Invitrogen). HRP-linked secondary antibodies 7076, 7074 at 1:5000 (Cell Signaling) were used for western blots and analyzed with an iBright Imaging system. EIPA (A3085), and LiCl (L4408), were obtained from Sigma. Baf (S1413) and PF-00562271 (FAK inhibitor, S2672) were purchased from Selleckchem. TMR-dextran 70 kDa was obtained from Thermo Fisher (D1818). PMA (1201) was purchased from TOCRIS.
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