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4 protocols using goat anti rat alexa fluor 633

1

Immunofluorescent Staining of Frozen Tissues

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Tissue samples were frozen in OCT (Tissue-Tek; Sakura). 7-µm sections were cut using a microtome (Leica) at −20°C, and then stained with rat anti–mouse GL7 followed by goat anti–rat Alexa Fluor 633 (Invitrogen). Slides were then blocked with normal rat serum and further stained with biotinylated rat anti–mouse IgD (Southern Biotech) and rabbit anti–mouse CD3 (Neo Markers) concurrently, followed by streptavidin Alexa Fluor 488 (Invitrogen) and goat anti–rabbit Alexa Fluor 555 (Invitrogen). Coverslips were mounted with ProLong Gold antifade reagent (Life Technologies) and sealed with clear nail polish. Slides were imaged on an LSM 780 C4.47 laser scanning confocal microscope (Zeiss) at 10× magnification.
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2

Immunostaining of Adult Drosophila Brains

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Adult brains were dissected in 1× PBS and fixed at room temperature for 25-30 min in 4% formaldehyde in phosphate buffer [4% formaldehyde, 0.1 M phosphate buffer (pH 7.2), 0.2% Triton X-100]. Samples were then washed with 1× PBS and placed in blocking buffer (PBS, 0.2% Triton X-100, 0.1% normal goat serum) for 2 h at room temperature or 4°C overnight. Brains were incubated with primary antibodies diluted with blocking buffer at 4°C overnight, then washed twice with PBST (PBS+0.1% Triton X-100) and incubated in secondary antibodies diluted with blocking buffer for 4 h at room temperature, then washed twice again with PBST. DAPI was added in the final wash for 30 min at room temperature. Brains were mounted on slides in Vectashield (Vector Laboratories, Burlingame, CA). The antibodies used are as follows: rabbit anti-cleaved Dcp-1 (Cell Signaling Technology, Danvers, MA; #9578, 1:100), mouse anti-Repo (Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA; 8D12, 1:50), Rat anti-Elav (Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA; 7E8A10, 1:250), DAPI (Sigma-Aldrich, St Louis, MO; 1 mg/l), goat anti-mouse Alexa-Fluor-488 (Life Technologies, Carlsbad, CA; 1:200), goat anti-rabbit Alexa-Fluor-568 (Life Technologies, Carlsbad, CA; 1:200), goat anti-rat Alexa-Fluor-633 (Invitrogen, Carlsbad, CA; 1:200).
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3

Immunohistochemical Staining of Drosophila Brain

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Brains were dissected, stained, and imaged as described in Sudmeier et al. (2015) (link). The antibodies used are as follows: Chicken anti-Green Fluorescent Protein (Life Technologies, Carlsbad, CA; 1:500), Mouse anti-Repo (Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA; 8D12, 1:50), Rat anti-Elav (Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA; 7E8A10, 1:250), DAPI (Sigma-Aldrich, St. Louis, MO; 1 mg/L), Goat anti-Chicken Alexa Fluor-488 (Life Technologies, Carlsbad, CA; 1:200), Goat anti-Mouse Alexa Fluor-568 (Life Technologies, Carlsbad, CA; 1:200), and Goat anti-Rat Alexa Fluor-633 (Invitrogen, Carlsbad, CA; 1:200).
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4

Macrophage Infiltration in DRG after DMM

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A separate set of mice were perfused transcardially with paraformaldehyde 16 weeks after DMM (n=5) or sham (n=5) surgery. Age-matched naïve controls (n=4) were also perfused. Ipsilateral L4-DRG were extracted, embedded, and cryosectioned (as described [17 (link), 23 (link)]). To assess macrophage infiltration, DRG sections were immunostained with F4/80 antibody (Abcam, cat# ab6640, 1:300), with goat anti-rat AlexaFluor 633 (Invitrogen, cat# A-21094,1:500) as a secondary antibody (details in Supplemental Methods).
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