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10 protocols using snakeskin dialysis tube

1

Fluorescent Labeling and Imaging of Midkine in Human Cardiomyocytes

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Fluorescein isothiocyanate (FITC) (Sigma Aldrich, St. Louis, MO, USA) was dissolved in DMSO. Two mg/ml Midkine (Dianova, Hamburg, Germany), dissolved in 0.1 M NaHCO3 were added to 3 mg/ml Fluorescein isothiocyanate (FITC) (Sigma Aldrich, St. Louis, MO, USA) solution and were incubated for 1 h at RT while continuously shaking. Unbound FITC was removed by using SnakeSkin® dialysis tube (ThermoScientific, Waltham, MA, USA). For dialysis, 1X phosphate buffered saline was used. Human CMs were seeded at a density of 6.3 × 104 cells/cm2 on ibidi 12-well chamber slides (ibidi, Germany). Afterwards, cells were incubated for 30 and 60 min with 100 ng/ml FITC-labeled Midkine. Cells were washed, fixed with 4% formalin and cell nuclei were counterstained using Hoechst (Sigma Aldrich, St. Louis, MO, USA). Cells were mounted with ProLong® Gold Antifade Mountant (ThermoScientific, Waltham, MA, USA). Cells were analyzed by blinded investigator by using Axio Imager M.2 microscope (Zeiss, Jena, Germany) and the Zeiss ZEN 2.3 software (Zeiss, Jena, Germany). Images were performed with 40x magnification (N.A. 0.75).
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2

Insect Cell-Based Protein Expression

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Spodoptera frugiperda 9 (Sf9) insect cells and Cellfectin II Reagent were from Invitrogen (Carlsbad, CA, USA). Escherichia coli DH5α cells were from Thermo Fisher Scientific (Waltham, MA, USA). X-Gal was from Bio-Rad (Hercules, CA, USA). Insect-XPRESS medium was from Lonza (Basel, Switzerland). Enzyme substrate H-Gly-Pro-pNA was from Bachem (Bubendorf, Switzerland). Chromatography resins and materials for SPR were from Cytiva (Chicago, IL, USA). SnakeSkin Dialysis Tube, 3.5 kDa molecular weight cut-off (3.5 k MWCO), was purchased from Thermo Fisher Scientific. All other reagents were from Sigma-Aldrich (St. Louis, MO, USA).
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3

Bovine Beta-Lactoglobulin Purification

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Commercially available bovine beta-lactoglobulin (≥90% pure, Sigma Aldrich, Steinheim, Germany) was dialyzed four times against 10 µM deferoxamine mesylate (DFO) by using snakeskin dialysis tube (ThermoScientific, MWCO 3.5 K), followed by four times dialyzation against deionized water.
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4

Purification of Protein via Affinity and Size-Exclusion Chromatography

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The protein was applied to a d-galactose-sepharose affinity column (Thermo Scientific) and eluted using 300 mM galactose in PBS. The fractions were concentrated using Vivaspin 20 ml concentrator tubes (5000 MWCO, PES membrane, Sartorius), and subjected to size-exclusion chromatography on a Superdex75 column mounted on an Äkta FPLC machine, pre-equilibrated with a Tris running buffer (20 mM Tris, 200 mM NaCl at pH 7.5). Fractions with toxin were dialyzed against the Tris running buffer in a Snakeskin dialysis tube (3500 MWCO, Thermo Scientific), concentrated using concentrator tubes to 3–10 mg/ml, and stored at −80 °C.
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5

Aspirin Release Kinetics in Vesicles

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To confirm that aspirin could be released from the vesicles, the release profile of the drug was determined by dialysis at pH 5.5, 6.5 and 7.4, respectively mimicking the subcellular endosome, the tumor extracellular environment and the physiological pH in normal tissue and blood. Each vesicular formulation (100 µg/mL in phosphate buffer)
was placed into a SnakeSkin ® dialysis tube with a molecular weight cut-off of 3 500 Daltons (ThermoFisher Scientific, Waltham, MA) and was dialyzed against 200 mL of phosphate buffer (pH 5.5, 6.5 and 7.4) at 37°C under stirring at 100 rpm. At specific time points (15, 30, 45 minutes, then every hour for the first six hours (2, 3, 4, 5 and 6 h), then every 2 hours for the next 6 hours (8, 10 and 12 h), and every 24 hours for 3 days), 1 mL sample of the dialysate was withdrawn in quadruplicates and replaced with an equal volume of fresh media. The amount of aspirin in the samples was quantified by spectrofluorimetry and reported as a percentage cumulative release.
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6

Affinity Purification of Ig Fractions

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The Ig fractions from NHP and from the EDTA plasma of patients P24, P25, P26, and P27 (Table 1) were isolated by affinity purification using NAb™ protein A/G 5 mL spin columns (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s protocol. In short, 0.85–1.0 mL of EDTA plasma was diluted with binding buffer (0.1 M phosphate, 0.15 M sodium chloride, and pH 7.2) to 10 mL and loaded on the columns. Unbound fractions were washed with binding buffer, and thereafter bound Igs were eluted using 0.1 M glycine, pH 2.5 followed by immediate neutralization with 1/10 volume 1 M Tris, pH 8.5. Subsequently, Ig fractions were dialyzed against phosphate buffered saline using SnakeSkin® dialysis tubes (Thermo Fisher Scientific, Waltham, MA, USA) with a 10 kD molecular weight cutoff and concentrated to the initial plasma sample volume using Amicon® Ultra-15 centrifugal filter devices (Merck Millipore, Billerica, MA, USA) with similar cutoff. Total protein concentrations in these samples were measured using NanoDrop Spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA) and varied between 4.73 and 12.48 mg/mL, which are within the normal range for Igs.
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7

Stepwise Ammonium Sulfate Protein Purification

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The crude enzyme extract (600 mL) was subjected to stepwise ammonium sulfate precipitations from 30 to 90% saturations at 4 °C. The precipitates were harvested by centrifugation at 8000× g for 20 min. The pellet was dissolved in 5 mL of 0.1 mM phosphate buffer, pH 7.0 and dialyzed (10,000 MWCO SnakeSkin® dialysis tubes, Thermo Scientific, Waltham, MA, USA) prior use. Each fraction was subjected to lipase and protein (Bradford reagent, Amresco, Solon, OH, USA) assays followed by SDS-PAGE.
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8

Synthesis of Cyclodextrin-Conjugated PEI Vectors

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Cyclodextrin species, namely αCD and βCD, were conjugated to branched PEI of molecular weight (Mn) 25 kDa by means of stepwise 1,1′-carbonyldiimidazole (CDI)-mediated reactions (Scheme 1). Briefly, a DMSO solution containing βCD activated with CDI was added to the aqueous solution of PEI 25k, and after the completion of the reaction, the polymeric material was purified by means of dialysis against water (3.5k MWCO membrane was used). The as-obtained polymeric material (PEI-βCD) was subjected to the reaction with αCD activated with CDI. Finally, after dialysis against water (3.5K MWCO Snake-Skin® Dialysis Tubes, Thermo Fisher Scientific, Warsaw, Poland) the desired polymeric vector (PEI-βCDCD) was obtained. The lyophilization was performed using FreeZone 1 L Laboratory Lyophilizer (LABCONCO, Gadńsk, Poland). The details of synthesis of individual components of the nanoconjugate are given below.
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9

Electrophoretic Mobility of BSA-5FU Complexes

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Electrophoretic mobility (µe) was determined using a Malvern Nano ZS analyzer (Worcestershire, UK). The measurements for pure BSA and BSA-5FU complexes were made in water with a constant BSA concentration of 1 mg/mL. Measurements were carried out for complexes with BSA/5FU molar ratios of 1:40 and 1:60. Complexes for electrophoretic mobility measurements were mixed for one h and then dialyzed using SnakeSkin™ dialysis tubes (MWCO 3.5 kDa) (Thermo Fisher, Waltham, MA, USA). Dialysis was conducted in deionized water for 24 hours in darkness. All electrophoretic mobility measurements were conducted in the pH range of 2.0–11.0. The pH of solutions was adjusted using sodium hydroxide (NaOH) at a concentration of 0.1 M and hydrochloric acid (HCl) at a concentration of 0.05 M. The zeta potential was related to the electrophoretic mobility via Henry’s equation. The Hückel limit (f(κa) = 1.0) was applied for the calculations.
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10

Binding Dynamics of BSA-5FU Complexes

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The measurements were performed for different BSA/5FU molar ratios: 1:10, 1:20, 1:40, and 1:60. The BSA concentration was constant at 0.25 mg/mL (3.8 μM). All complexes were prepared in distilled water, and the pH of all samples was adjusted to pH = 8.4. The BSA/5FU mixtures were stirred in the dark for 1 h. To remove uncomplexed drug molecules, the dialysis of complexes was performed using SnakeSkin™ dialysis tubes (MWCO 3.5 kDa, Thermo Fisher Scientific, Waltham, MA, USA). This process was carried out in distilled water at pH 8.4 for 24 h at room temperature.
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