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8 protocols using renilla luciferase expression plasmid

1

Luciferase Reporter Assay for XRE and ARE

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Cells were transfected with XRE (Stratagene, La Jolla, CA, USA) or antioxidant response element- (ARE-) Luc reporters (Addgene, MA, USA), along with 1 μg of the Renilla-luciferase expression plasmid (Promega, Madison, WI, USA) (internal standard) using the DharmaFECT® Duo transfection reagent (Thermo Fisher Scientific, Inc.) according to the manufacturer's recommendations. After 24 h, cells were treated and incubated with CAE for 24 h. The cells were then harvested and subjected to luciferase activity using the Dual Luciferase Assay system (Promega) on the LB953 luminometer (Berthold, Germany). The data were expressed as a ratio of the XRE- or ARE-dependent firefly-luciferase activity to the thymidine-kinase Renilla-luciferase activity (% control). The data were verified with three independent experiments.
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2

Dual-Luciferase Reporter Assay Protocol

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This assay was done as described previously [12 (link)]. Briefly, cells cultured in 6-well plates were transfected for 24 h with luciferase reporter plasmid as well as with a Renilla luciferase expression plasmid (Promega) using the Lipofectamine 2000 reagent (Life Technologies). The cells were collected 24 h after transfection, lysed and analysed for luciferase activities using a Dual-luciferase Reporter Assay system (Promega) that already contains an internal control detectable simultaneously with the luciferase reporter gene. The activity of firefly luciferase was normalized by that of the Renilla enzyme.
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3

Validating miR-134-3p Regulation of FEN1

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Firstly, the starBase database (http://starbase.sysu.edu.cn/) was used for prediction of miR-134-3p target genes. R<-0.1 and P<0.05 were set as the cut-off criteria for identifying the significant miRNA/gene pairs. One of the identified target genes was FEN1. Subsequently, FEN1-wild-type (WT) or FEN1-mutant (MUT) reporter plasmids were synthesized from Shanghai GenePharma Co., Ltd. Briefly, SKOV-3 and OVCAR-3 cells were co-transfected with 0.24 µg of the FEN1-WT or FEN1-MUT reporter plasmids together with 40 nM of miR-134-3p mimic or NC mimic using the cell electroporation system operator H1, as aforementioned. Additionally, 0.05 µg of Renilla luciferase expression plasmid (Promega Corporation) was transfected into the cells as a reference control. The transfected cells were seeded into 24-well plates for 36 h of culture at 37°C. Finally, firefly and Renilla luciferase activities in the cells were measured using the Dual-Luciferase Reporter Assay System (Promega Corporation). The ratio of firefly and Renilla luciferase activities was calculated as the relative luciferase activity.
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4

Luciferase Reporter Assay for FOXO3A

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293T HEK cells in 24-well plates were transfected with a total amount of 1 µg DNA by Attractene. A renilla luciferase expression plasmid (Promega, Madison, WI, USA) as internal control, a luciferase reporter plasmid driven by a 1.7 kb Puma promotor region (−1200 to +500 from ATG) containing a conserved binding site for FOXO3A (CAAACAAT or mutated to CAGGGAAT)25 (link) and FOXO3A-TM (T32A, S253A, S315A) pcDNA3.1 expression plasmid were used in a 1:1:1 ratio. Empty vector was added as needed to keep the total DNA constant. Eight hours after transfection DMSO or CT98014 (0.75 µM) were added. Cells were lysed using 100 µl luciferase-lysis buffer (50 mM Tris-phosphate pH 7.8, 250 mM KCl, 10% Glycerol, 0.1% NP-40), lysates cleared by centrifugation at 16.100×g for 5 min, 4 °C. A volume of 10 µl of the lysate was added in two black 96-well plates, renilla buffer (25 mM Tris-phosphate, 100 mM NaCl, 1 mM EDTA, 0.05 mM Coelenterazin) or luciferase buffer (25 mM Tris-phosphate, 10 mM MgSO4, 2 mM ATP, 0.05 mM Luciferin) were auto-injected and firefly and renilla luciferase activities were determined by a plate reader.
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5

Dual-Luciferase Assay for RB and E2F

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HT-29 and HGUE-C-1 cells were seeded in 24-well culture plates (180,000 and 150,000 cells/well, respectively). When cells reached 40–60% confluence (24 hr), they were transiently transfected with 0.8 μg of pRb-TA-Luc or pE2F-TA-Luc responsive luciferase reporter plasmid (Clontech, Mountain View, CA), using Lipofectamine2000 reagent (Invitrogen, Carlsbad, CA, USA) in a DNA transfection agent ratio of 1:3. The pTa-Luc vector lacking the response element was used as negative control. Six hours after transfection, culture medium was replaced by fresh medium and cells were kept under normal growth condition in DMEM with 10% foetal serum for 24 hours prior to lysis and luciferase detection. All transfections were performed as co-transfections using a Renilla luciferase expression plasmid (Promega Corporation, Madison, WI) to establish an internal control for transfection efficiency. The transfected cells were washed once with PBS and lysed using 100 μl Passive Lysis Buffer (Promega). Firefly and Renilla luciferase activities were determined using the Dual-Luciferase Reporter Assay System (Promega) according to the manufacturer’s instructions, using for detection of the chemiluminescent signal, a luminometer from Berthold (Montreal Biotech, Kirkland, QC). Promoter activities of the RB and E2F reporter plasmids were expressed using the arbitrary units “RLU” (relative luciferase units).
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6

Luciferase Reporter Assay for Promoter Activity

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Luciferase reporter plasmids were constructed by cloning a 2-kb-long fragment centered around the TSS upstream of the firefly luciferase gene in a pGL3-basic vector (Promega) for each promoter or a variant fragment generated by PCR mutagenesis of the putative CDE/CHR motif. NIH/3T3 cells (106 cells) were transfected using Lipofectamine 2000 with 3 µg of the luciferase reporter plasmid and 30 ng of Renilla luciferase expression plasmid (pGL4.73; Promega) for normalization and treated or not with 10 µM nutlin 3a. Transfected cells were incubated for 24 h, trypsinized, resuspended in 75 µL of culture medium with 7.5% fetal calf serum, and transferred into a well of an optical 96-well plate (Nunc). The Dual-glo luciferase assay system (Promega) was used according to the manufacturer's protocol to lyse the cells and read firefly and Renilla luciferase signals. Results were normalized, and the average luciferase activity in cells transfected with a wild-type promoter and not treated with nutlin was assigned a value of 1. Differences between two groups were analyzed by Student's t-test, and values of P ≤ 0.05 were considered significant.
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7

Chondrocyte NFAT1 Binding Assay

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Articular chondrocytes were isolated from pooled femoral head AC samples of WT or Nfat1-/- mice using collagenase D (1.5 mg/ml; Roche Diagnostics, Indianapolis, Indiana) and cultivated in Dulbecco’s Modified Eagle Medium (DMEM)/F12 medium in a humidified incubator with 5% CO2 at 37ºC in monolayer. Because primary chondrocytes (P0) displayed an uneven growth rate and cell density, passage 1 (P1) of cultured articular chondrocytes was used for plasmid transfection and luciferase assay.
The DNA fragments in the promoter region of the genes of interest containing the putative NFAT1 binding sequences were cloned into the multiple cloning site of pGL3 firefly luciferase vector (Promega, Madison, Wisconsin). The DNA fragments containing mutated putative NFAT1 binding consensus core DNA sequences (GGAAA to GCATA) were synthesized and cloned into pGL3 vector by Genewiz (South Plainfield, New Jersey). Passage 1 chondrocytes were cultured in 24-well plates and used for transfection of luciferase reporter plasmids with Lipofectamine 2000 (Thermo Fisher Scientific, Waltham, Massachusetts). Empty pGL3 vector was used as a negative control. Renilla luciferase expression plasmid (Promega) was co-transfected to normalize the transfection efficiency. Luciferase activity was read on a GloMax luminometer (Promega).
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8

Wnt Signaling Reporter Assay

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TOPflash and FOPflash reporter plasmids (Millipore) were transfected into CRC cell lines with Effectene transfection reagent (Qiagen) using the manufacturer’s instructions. Firefly and renilla luciferase activities were measured using the dual luciferase reporter assay system (Promega, Madison, WI) according to the manufacturer’s instructions. Briefly, each cell line was plated at 5×104 cells/well in 12-well plates. Cells were co-transfected with TOPflash or FOPflash reporter plasmids and the renilla luciferase expression plasmid (Promega) and treated with dimethyl sulfoxide or SB216763 for 48 h. Data were obtained by calculating the ratio of firefly/renilla luciferase expressions for the TOPflash and FOPflash reporter plasmids. The FOPflash ratio was subtracted from the TOPflash ratio. Data represent three separate experiments performed in triplicate.
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