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9 protocols using pd98059

1

Investigating EGF Signaling Cascades

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EGF was obtained from BD Bioscience. U0126 and PD98059 were obtained from LC Laboratories. Respective proteins were detected using specific primary antibodies, including: GAPDH, phospho-ERK1/2, ERK1/2, MEK1/2, COL1A1 and EGFR (Santa Cruz Biotechnology); His, Shoc2 and LGALS3BP (Proteintech); phospho-AKT, KSR1, phospho-MEK1/2 (Cell Signaling).
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2

Antibody Labeling and Cell Signaling

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All primary antibodies used are listed in Supplementary Table 2. Cy3- and horseradish peroxidase-conjugated secondary antibodies were all from Jackson Immunochemicals (LABNET OY, Helsinki, Finland) and Alexa488-conjugated secondary antibodies were from Invitrogen. TRITC-Phalloidin and 2-(4-amidinophenyl)-1H -indole-6-carboxamidine were purchased from Sigma-Aldrich (Merck, Helsinki, Finland). Hygromycin B and Puromycin were from Thermo Fisher Scientific (Helsinki, Finland). dimethyl sulfoxide was from Sigma-Aldrich. The MEK inhibitor PD98059 was from LC Laboratories (Woburn, MA, USA). The PI (3) K inhibitor Pictilisib was from Selleck Chemicals (SMS Gruppen, Rungsted, Denmark).
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3

Breast Cancer Cell Signaling Assay

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Palbociclib, AZD4547, fulvestrant/ICI-182,780, LY294002, and PD98059 were purchased from LC Laboratories (Woburn, MA, USA); bFGF was purchased from StemCell Technologies (Vancouver, BC, USA). FGFR1 (9740), p-Akt (Ser473) (4060), p-Erk1/2 (Thr202/Tyr204) (9101), p-pRb (Ser807/811) (8516), pRb (9309), cdc2 (9116), cdc25 (4688), Cyclin B1 (12231), Cyclin D1 (2978), p-ERα (Ser118) (2511), p-ERα (Ser167) (5587), c-Myc (5605), TCF1 (2203), p-FRS2 (Tyr196) (3864), LRP6 (3395), and p-LRP6 (Ser1490) (2568) primary antibodies were purchased from Cell Signaling Technologies (Danvers, MA, USA). Akt1 (sc-5298), Erk2 (sc-1647), ERα (sc-8002), E2F1 (sc-251), Cyclin D3 (sc-182), CDK4 (sc-260), and β-actin (sc-47778) primary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Active β-catenin (05-665) antibody was purchased from EMD Millipore (Billerica, CA, USA).
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4

Inhibitor Compound Preparation and Storage

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Selumetinib (AZD6244, MEK inhibitor), trametinib (GSK1120212, MEK inhibitor), KX2-391 (Src inhibitor) and tofacitinib (CP-690550, JAK3 inhibitor) were purchased from Selleck Chemicals (Houston, TX, USA). PD98059 (MEK inhibitor) and ruxolitinib (INCB081424, JAK1/2 inhibitor) were purchased from LC Laboratories (Woburn, MA, USA). LY5 (STAT3 inhibitor [67 (link)]) was synthesized by Chenglong Li's Lab (College of Pharmacy, The Ohio State University). The drug compounds were dissolved in sterile dimethyl sulfoxide (DMSO) to make a 20 mM stock solution stored at −20°C.
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5

Culturing Pancreatic Cancer Cell Lines

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Seven human pancreatic cancer cell lines, HPAF-II, BxPC3, Capan2, CFPAC-1, HPAC, SU.86.86, and MIA PaCa-2 cells were obtained from American Type Culture Collection (ATCC). These cell lines are cultured in complete growth medium as the previous study11 (link). HPAF-II was maintained in MEM. BxPC3 and SU.86.86 were maintained in RPMI-1640. Capan2 was maintained in MyCoy’s 5A. CFPAC-1 was maintained in IMDM. HPAC was maintained in DMEN/F12. All the media were supplied with 10% FBS. MIA PaCa-2 was maintained in DMEM with 5% horse serum. And the cells were incubated at 37 °C with 5% CO2 supplement. All medium supplements were purchased from ThermoFisher (Waltham, MA, US). MEK kinase inhibitor U0126 and PD98059 were purchased from LC Laboratories (Woburn, MA, US). MUC1 inhibitor Go-201 and NF-κB inhibitor BAY11-7082 were purchased from Sigma-Aldrich (St. Louis, MI, US).
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6

Mouse Bone Marrow Cell Stimulation

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Isolated mouse BMCs were suspended in StemSpan serum-free medium (StemCell Technologies, Vancouver, BC, Canada) containing 20% mouse plasma and then plated into 24-well tissue culture plates with 500 µl of cell suspension (containing 5 × 106 cells) per well. Culture of cells was conducted without or with lipopolysaccharide (LPS, E. coli 0111:B4, 20 ng/ml, Sigma-Aldrich Co., LLC, St. Louis, MO, USA) stimulation in the absence and presence of specific mitogen-activated protein kinase kinase1/2 (MEK1/2) inhibitor PD98059 (25 µM, LC Laboratories, Woburn, MA, USA) for 18 h.
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7

Cellular Signaling Pathway Analysis

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Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), phosphate buffer saline (PBS), Horse serum (HS), antibiotics and antimycotics, trypsin 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and Hoechst 33342 were purchased from Invitrogen (Carlsbad, CA, USA). PD98059, SB415286, and LY294002 were obtained from LC laboratories (Woburn, MA, USA). ECL plus kit were purchased from Amersham Bioscience (Aylesbury, UK). 2′, 7′-Dichlorodihydrofluorescein diacetate (DCFH-DA), ethyl alcohol (absolute ethanol), and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich Inc. (St. Louis, MO, USA). Cell lysis buffer, antibodies against phospho-MEK 1/2, phospho-ERK 1/2, ERK, phospho-PI3K, phospho-Akt, Akt, phospho-GSK3β, GSK3β were obtained from Cell Signaling Technology (Beverly, MA, USA). Antibody against β-actin was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). All other chemicals used were of analytical grade.
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8

Epigenetic and EMT Regulation in Lung Cancer

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HBEC were obtained from Clonetics (San Diego, CA, USA) and cultured in BEG media (Lonza, Walkersville, USA). Human lung carcinoma cell lines, including small-cell lung cancer cell (COLO677, COLO668, H82, DMS79, H526, SHP77 and H123) and NSCLC cell lines (ADC: H1299, H2030, H23, A549, H322, H1650, H1975, D51, D54, H125, D117, D97 and BEN/97 as well as SCC: H2170, H226, H157), were purchased from the American Type Culture Collection (ATCC, Rockville, USA) or established in our laboratory (D51, D54, D117 and D97) [8 (link)]. Cells were grown in RPMI 1640 medium (Biochrom AG, Berlin, Germany) or Leibovitz 15 media (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% fetal bovine serum (Biochrom AG) and maintained in a humidified atmosphere with 5% CO2 at 37°C.
For demethylation, 5 μM of DAC (Sigma Chemical Co., St Louis, MO USA) was added into the medium on days 0, 2 and harvested in days 4 when cells around 60 % confluence. For deacetylation tests, cells were treated with 1 μM of TSA (Sigma) for 1 day.
To study the effect of TGF-β1 on EMT, cells were starved in serum-free medium overnight and treated with 5 ng/ml of human recombinant TGF-β1 (PeproTech, New Jersey, USA) and/or 10 μM of PD98059 (LC laboratories, Woburn, MA USA) for 24 h.
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9

Glioblastoma Cell Culturing and Characterization

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U87 glioma cells were maintained in Dulbecco’s Modified Eagle Medium (DMEM) containing 10% FBS and 1% penicillin/streptomycin. HK281 GBM-spheres [a kind gift from Harley Kornblum, UCLA, (Visnyei et al., 2011 (link))] were cultured in DMEM/F12 medium supplemented with 1× B27 (GIBCO/Life Technologies), 1% penicillin/streptomycin, human recombinant EGF (20 ng/mL), bFGF (20 ng/mL) and 2 mg/mL heparin (StemCell Technologies). All cells were maintained at 37°C, 5% CO2, and 100% relative humidity for the duration of the experiment. Reagents used in this study were obtained from the following sources: Antibodies: EGFR (BD Biosciences), pan-phospho-Tyrosine-HRP (R&D Systems), p42/44 MAPK, phospho-p42/44 MAPK, STAT3, phospho-STAT3 y705, AKT, phospho-AKT s473 (Cell Signaling Technology), Ki67 (Santa Cruz Biotechnology), and β-Actin (Sigma). Inhibitors: U0126 and PD98059 (LC Laboratories). The monoclonal antibody 806 was produced in the Biological Production Facility at the Olivia-Newton John Cancer Research Institute (Melbourne, Australia).
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