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15 protocols using glycerol solution

1

Antibiotic Susceptibility Testing with EPIs

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Mueller-Hinton broth was purchased from Sigma-Aldrich and Tween 80 from Merck-Schuchardt. The solvents used in this work were ethanol (>99.9%) from Panreac, toluene (>99.5%) from Riedel-de Häen, MTBE (>99.5%) from Fluka Analytical, and glycerol solution (86–89%) from Sigma-Aldrich. The antibiotics were levofloxacin and teicoplanin whilst the efflux pump inhibitors (EPIs) used were thioridazine and omeprazole, all from Sigma-Aldrich.
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2

Lipid-Based Pharmaceutical Formulations

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E80 egg phospholipids (80% phosphatidylcholine) and S100 soybean lecithin lipids (>94% phosphatidylcholine) were obtained from Lipoid GmbH (Ludwigshafen, Germany). Acetic acid, bovine serum albumin, calcium hydroxide, chitosan (low molecular weight, 75–85% deacetylated), chloroform, D(+)-glucose, glycerol solution, ibuprofen, lactic acid, mucin from porcine stomach type III, potassium phosphate monobasic, propylene glycol, sodium chloride, sodium hydroxide, and sodium phosphate dibasic dodecahydrate were products of Sigma Aldrich Chemie GmbH (Steinheim, Germany). Ethanol, mEthanol, and Acetic acid were obtained from VWR Chemicals (Fontenaysous-Bois, France). Potassium hydroxide was obtained from Norsk Medisinaldepot (Oslo, Norway).
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3

Coomassie Blue Staining of Sperm Acrosome

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The sperm pellets were fixed with 4% paraformaldehyde (w/v) in PBS (pH 7.4) for 15 minutes on ice. The samples were then washed and resuspended with PBS. The fixed sperm were smeared on gelatin-coated slides (Unifrost Microscope Slide, Catalogue No. EMS200Wþ; Azer Scientific, Morgantown, PA, USA) using a wooden stick. The dried sperm were stained with 0.22% Coomassie blue G-250 (50% methanol, 10% glacial acetic, 40% water) for 2 minutes and were then washed three times with PBS before mounting with a glycerol solution (Sigma-Aldrich). Six hundred sperm from each animal were examined under a light microscope. Acrosome-intact sperm were identified by staining of their acrosomes with Coomassie blue, whereas acrosome-reacted (AR) sperm did not show staining [31 (link),32 (link)].
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4

Multimodal Tissue Imaging by t-CyCIF

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The t-CyCIF experimental protocol was conducted as previously
described (Du et al., 2019 (link); Lin et al., 2018 ). In brief, the mouse
and human lung adenocarcinoma and human melanoma FFPE slides were baked at
60°C for 30 min, dewaxed using Bond Dewax Solution (Leica Biosystems)
at 72°C, and antigen retrieval was performed with Epitope Retrieval 1
Solution (Leica Biosystems) at 100°C for 20 minutes using the BOND RX
Automated IHC/ISH Stainer (Leica Biosystems). All antibodies were diluted in
Odyssey Intercept Buffer (plus Hoechst 33342 0.25 μg/mL; LI-COR
Biosciences) and incubated overnight at 4°C in the dark. See the
Key Resources Table for the
complete list of antibodies. Slides were coverslipped using 20–50%
glycerol solution (Sigma-Aldrich) in PBS. Images were taken using DAPI,
FITC, Cy3, and Cy5 channels on the RareCyte CyteFinder Instrument
(20x/0.75NA objective lens). After imaging, the fluorophores were
inactivated with photobleaching solution (4.5% H2O2 and 20 mM NaOH in PBS)
for 45 minutes under LED ligfFigurehts.
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5

Aflatoxin B1 Degradation Protocol

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AFB1 was acquired from Trilogy Analytical Laboratory, Inc. (Vossbrink Drive, WA, USA). The bacterial culture media were Man deRogosa (MRS) broth (Himedia, Bombay, India), MRS agar (Himedia, Bombay, India), and glycerol solution (Sigma-Aldrich, St. Louis, MO, USA). Phosphate-buffered saline was purchased from Merck (Darmstadt, Germany).
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6

Biotinylated DNA Strand Detection

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DNA strands, including two biotinylated probes and one target strand, were purchased from Integrated Device Technology (San Jose, CA, USA). The glycerol solution (refractive index = 1.4729)35 and phosphate buffered saline (PBS) tablets were purchased from Sigma (St. Louis, MO, USA). The SA-GNU were purchased from Cytodiagnostics (Ontario, Canada). The conventional UV-Vis spectrometer used in this study was a Cary 300 Bio (Varian Medical Systems, Palo Alto, CA, USA), and all solutions were prepared using Milli-Q (Millipore, Bedford, MA, USA) A-10 grade deionized water.
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7

Characterizing Indigenous Yeast Strains

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In this work, fifty indigenous S. cerevisiae strains (non-commercial strains), belonging to UNIBAS Yeast Collection (UBYC), University of Basilicata (Potenza, Italy) and previously isolated from food environments, were studied (Table 1). Furthermore, two commercial strains, EC1118 (Lallemand Inc., Toulose, France), a winemaking starter, and a probiotic S. cerevisiae var. boulardii strain (coded as Sb) and isolated from the commercial product Codex (Zambon, Italy), were used. The strains were maintained at −80 °C in a glycerol solution (Sigma, Milan, Italy); before each experiment, yeast strains were grown in YPD (yeast extract 1%, bacteriological peptone 2%, glucose 2%, agar 2%, Oxoid, Hampshire, UK) at 26 ± 2 °C for 24 h.
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8

Muscle Regeneration Model in Mice

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Two kinds of injury-induced muscle regeneration model were used as described32 (link),40 (link). The tibialis anterior (TA) and the gastrocnemius muscles of anesthetized mice (100 mg kg−1, 1% pentobarbital sodium, i.p.) were injected with 30 μl and 60 μl of 10 μM cardiotoxin (Sigma, St. Louis, MO) or 50% glycerol solution (Sigma, St. Louis, MO) respectively. At different time points after injury, three to four mice were sacrificed by cervical dislocation while under anesthesia and muscles were harvested. TA muscles were mounted in OCT and frozen in isopentane chilled with liquid nitrogen and stored at −80 °C. Gastrocnemius muscles were frozen in liquid nitrogen for mRNA and protein extraction.
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9

Detoxification of Aflatoxin B1 in Yakult

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Yakult fermented milk drink was purchased from a local supermarket in Serdang, Selangor, Malaysia. AFB1 was acquired from Trilogy Analytical Laboratory, Inc. (Vossbrink Drive, Washington). MRS broth, MRS agar, and sodium chloride were purchased from Merck (Darmstadt, Germany). Glycerol solution was procured from Sigma-Aldrich (St. Louis, MO, USA). ELISA kit for the detection of AFM1 in urine was purchased from Helica Biosystems, Inc. (Santa Ana, CA, USA).
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10

Modified Poly(ethersulfone) UF Membranes

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Modified poly(ethersulfone) HF UF membranes
were kindly provided by NX Filtration B.V., Enschede, The Netherlands.
The provided membranes have an approximate 90% MWCO of 10 kDa
and an inner diameter of 0.7 mm. Poly(allylamine hydrochloric
acid) (PAH, Mw = 150.000 g mol–1, 40 wt % in water) was obtained from Nittobo
medical CO., LTD, Japan. Poly(acrylic acid) (PAA, Mw = 250.000 g mol–1, 35 wt
% in water), poly(sodium-4-styrenesulfonate) (PSS, Mw = 200.000 g mol–1, 30 wt
% in water), poly(diallyldimethylammonium chloride) (PDADMAC, Mw = 200.000–350.000 g mol–1, 20 wt % in water), glycerol solution (86–89%),
MgCl2 hexahydrate (purity 99%), sodium hydroxide (pellets,
purity 98%), and hydrchloric acid (ACS reagent, 37%) were purchased
from Sigma-Aldrich. H2SO4 (96% in H2O) was purchased from Acros Organics B.V.B.A. NaCl (purity 99.9 wt
%) was kindly provided by Nouryon Industrial Chemicals. H2O2 (30 w/w% solution in H2O), Na2SO4 decahydrate, ethylene glycol, and polyethylene
glycol (PEG) of various Mw (200, 400,
600, and 1000 Da) were obtained from Merck. Diethylene glycol was
purchased from Sigma-Aldrich. All chemicals were used without any
purification.
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