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255 protocols using immu mount

1

SH-SY5Y Cells Immunostaining Protocol

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For immunostaining, SH-SY5Y cells (4.5 × 104) were grown on sterilized coverslips in 24-well plates. 30 h post-transfection, cells were fixed using 4% paraformaldehyde (PFA; diluted in PBS) for 15 min, and then washed 3 times with PBS (5 min each wash). Cells were then permeabilized with 0.3% Triton X-100 in PBS for 5 min followed by washing with PBS. Cells were then blocked for 1 h with blocking buffer (1% BSA free fatty acids diluted in PBS). Anti-VDAC1 polyclonal antibody (ab15895) and mouse anti misfolded SOD1 (B8H10, Medimabs) were incubated at room temperature for 1–2 h in a buffer of 1% BSA free fatty acids and 0.3% Triton-X100 in PBS. Following incubation with primary antibodies, cells were washed with PBS and incubated with fluorescent conjugated secondary Alexa Flour 488 anti-rabbit and Alexa flour 647 anti-mouse antibodies. The coverslips were carefully dried and mounted on slides using Immumount (ImmumountTM, Thermo). After overnight drying, images were acquired on an Olympus IX81 confocal microscope.
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2

Immunohistochemical Analysis of Tissue Samples

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The tissues were dissected in Dulbecco’s phosphate buffered saline (PBS), fixed overnight at +4°C in 4% paraformaldehyde (PFA), washed briefly, dehydrated and embedded in paraffin and sectioned (6 µm). The tissue sections were stained with haematoxylin and eosin or used for immunohistochemistry. Antigen retrieval was enhanced by boiling the slides in 0.02 m citric acid buffer, pH 6, for 20 min or by incubating them in 0.04% pepsin, pH 2, for 30 min. followed by blocking with the appropriate serum for 1 h.
The primary antibodies used were Pax2 (Covance, PRB-276P) (1:100), α-SMA (Abcam ab5694) (1:100) and pan-cytokeratin (1:100) (Santa Cruz, sc-15367). These were incubated overnight at +4°C, washed with PBS, followed by 1 h of staining with the respective Alexa Fluor 488/546 or HRP-conjugated secondary antibody at a dilution of 1:1000. Hoechst 33258 (Polyscience, Inc.) was used to stain the nucleus. The specimens were mounted with Immu-Mount (Fisher Scientific), inspected using a confocal microscope and photographed (Olympus Fluoview FV10-ASW).
The activity of the floxed RosaR26R-derived β-galactosidase was identified as published (36 (link)), counterstained with eosin for 2 min and mounted with Immu-Mount (Fisher Scientific).
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3

Monocyte Characterization and Viability Assay

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Monocytes were cultivated for 1 DIV with and without SPIO treatment on poly-d-lysine (Sigma-Aldrich) coated glass slides. Then specimens were fixed with 4% PFA (Merck KGaA). Nuclear Fast Red (NFR) (Carl Roth, Karlsruhe, Germany) and Prussian blue staining procedures, embedding with Immu-Mount (Thermo Fisher Scientific) as well as coverslipping were performed as described before (Perl and Good, 1992; Tysiak et al., 2009).
For assessing morphologic characterizations, monocytes were stained after incubation with rat anti-mouse CD11b monoclonal antibody (mAb) overnight at 4°C (1:1000, RRID: AB_2829357; Leinco Technologies, St. Louis, MO, USA), goat anti-rat Alexa Fluor 568 mAb for 2 hours at room temperature (1:500, RRID: AB_2534121; Thermo Fisher Scientific), and 4′,6-diamidino-2-phenylindole (DAPI) (Carl Roth) followed by embedding using Immu-Mount (Thermo Fisher Scientific) and coverslipping.
To analyze the total number as well as the amount of viable and dead cells, monocytes were stained using a cell viability imaging kit (Roche Diagnostics GmbH, Mannheim, Germany) in accordance with the manufacturer’s protocol. Briefly, 50 µL of dye mixture was added to 200 µL of the medium of each specimen followed by 30 minutes of incubation at 37°C in a humidified 5% CO2-enriched atmosphere.
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4

Immunofluorescence Staining of Cells

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Tissue sections or cells were fixed with ice-cold methanol and permeabilized with 1% Triton-X 100 in PBS. Thereafter, the detergent was removed by repeated washing in PBS. Primary antibodies (see Additional file 1) were applied in PBS overnight (4 °C). After the incubation with secondary antibodies (see Additional file 1) and subsequent staining with DAPI, cells were covered with IMMU-MOUNT (Thermo Electron Corporation; Pittsburgh; USA) and a glass coverslip. Images were taken by confocal laser scanning microscopy (Nikon Eclipse Ti-E, Düsseldorf, Germany).
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5

Cellular Uptake of DOX-Loaded Nanoparticles

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Cellular uptake of DOX-loaded HAssLG nanoparticles was studied with fluorescence microscopy observation and flow cytometry analysis. MDA-MB231 cells were seeded onto a cover glass and incubated overnight in a CO2 incubator (5 % CO2 at 37 °C). Then, nanoparticles were treated to cells for 1 h in a CO2 incubator. One hour before the addition of nanoparticles, the CD44 receptor was blocked by pretreatment of free HA (10 equivalents of nanoparticle contents). Following this, cells were washed with PBS (pH 7.4, 0.1 M) and fixed with 4 % paraformaldehyde. This was fixed with immobilization solution (IMMU-MOUNT, Thermo Electron Corporation, Pittsburgh, PA, USA). Cells were then observed with a confocal laser scanning microscope (CLSM, TCS-SP2; Leica, Wetzlar, Germany).
For flow cytometry analysis of cells, 1 × 106 cells were seeded in each well of six-well plates. Nanoparticles were treated to the cells and incubated for 1 h in a CO2 incubator. One hour before the addition of nanoparticles, the CD44 receptor was blocked by pretreatment of free HA (10 equivalents of nanoparticle contents). Cells were washed with PBS (pH 7.4, 0.1 M) and trypsinized to harvest cells. The cells were analyzed with flow cytometery (FACScan) at an excitation wavelength of 488 nm and emission wavelength of 522 nm for DOX fluorescence intensity.
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6

Cellular Uptake of Photosensitizers

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5 × 105 cells seeded on the cover glass in 6 well plates were exposed to Ce6 or nanophotosensitizers. Ninety minutes later, cells were washed with PBS twice and fixed with 4% paraformaldehyde solution. They were mounted with immobilization solution (Immu-Mount, Thermo Electron Co., Pittsburgh, PA, USA) to observe cell morphology using fluorescence microscope (Eclipse 80i; Nikon, Tokyo, Japan).
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7

Folate-Mediated Nanophotosensitizer Delivery

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KB cells (5 × 105 cells/well) seeded onto cover glass in 6-well plates were cultured overnight at 37 °C in a 5% CO2 incubator. Prior to nanophotosensitizer treatment, cells were treated with 5-mM folic acid for 1 h to study folate receptor sensitivity. Cells were washed with PBS and then exposed to Ce6 or nanophotosensitizers (2-μg/mL as a Ce6 concentration) for 1 h. Following this, cells washed with PBS was fixed with 4% paraformaldehyde solution and then mounted with Immu-Mount solution (Thermo Electron Co, Pittsburgh, PA, USA) to observe cells using fluorescence microscope.
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8

Immunofluorescence Staining Protocol

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Cells were fixed with ice-cold methanol and permeabilized with 0.1% Triton-X 100 in PBS. Thereafter, the detergent was removed by repeated washing in PBS. Primary antibodies (Appendix Table S1) were applied in PBS overnight (4°C). After incubation with secondary antibodies (Appendix Table S1) and subsequent staining with DAPI, we covered the cells with Immu-Mount™ (Thermo Electron Corporation; Pittsburgh; USA). Images were taken by confocal laser-scanning-microscope Eclipse Ti-E, (Nikon GmbH, Düsseldorf, Germany).
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9

Immunofluorescence Microscopy of Cells

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Cells grown on coverslips were washed with phosphate-buffered saline (PBS) and fixed by incubation with 4% formaldehyde in PBS for 20 minutes at room temperature. Cells were incubated with 2 mg/L DAPI and 1x phalloidin-633 (SC-363796, Santa Cruz Biotechnology) in PBS to stain for nuclei and Tubulin. Coverslips were mounted onto microscopy slides using Immu-Mount (Invitrogen) and left to dry overnight at 4°C. Images were taken using a Leica TCS SP5 confocal microscope with HCX PLAN Apochromat lambda blue 63.0x1.40 oil UV objective. Samples were scanned using a 405-nm Violet Diode laser for DAPI staining, a 488-nm argon laser for GFP and a 633-nm helium-neon laser for phalloidin. Detector gain (PMT and HyD) and offset (PMT) settings were kept constant within experiments that compared a fusion protein in different conditions.
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10

Immunofluorescence Staining of Permeabilized Cells

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Paraformaldehyde-fixed cells were subjected to short cell membrane
permeabilization with 0.5% Triton X-100 in PBS for 5 min. After quenching the
cross-linking with 50 mM glycine, the samples were blocked for 30 min at RT with
5% natural goat serum (NGS) and subsequently incubated with primary antibodies
for 2 hours at RT. After three sequential washing steps with PBS, secondary
antibodies conjugated to a fluorophore were added, together Phalloidin (Abcam)
for staining of actin for 45 min at RT. For nuclear staining, the samples were
incubated with DAPI dye (2 mg/L, Sigma-Aldrich, St. Louis, MO) for 5 min prior
to mounting the coverslips on microscopy slides (ThermoFischer Scientific,
Waltham, MA) with Immu-Mount (Invitrogen, Carlsbad, CA).
Images were obtained using SP8-X confocal microscope (Leica
microsystems, Germany) using a HC PL APO 63x/1.40 Oil CS2 objective. Gain and
offset settings were adjusted according to the fluorescence signal, but they
were kept constant in comparative experimental designs such as
doxycycline-induction tests. Exported files were next subjected to linear
contrast and brightness processing in Photoshop (CS6, 13.0.6 x64, extended) for
image representation purposes.
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