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41 protocols using tram 34

1

Vascular Contractility Assay Protocols

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The following drugs were used: Acetylcholine, phenylephrine hydrochloride (PE), iberiotoxin, SNP (sodium nitroprusside dehydrate), U46619 (9α-epoxymethanoprostaglandin F), pirfenidone (5-methyl-1-phenyl-2-(1H)-pyridone), flupiritine (ethyl 2-amino-6-((p-fluorobenzyl)amino)-3-pyridinecarbamate), mannitol, NG-nitro-l-arginine (L-NOARG), tempol, TEA (tetraethylammonium), TRAM-34, UCL1684, and XE991 (10,10-bis(4-pyridinylmethyl)-9(10H)-anthracenone) were purchased from Sigma (St Louis, MO, United States). TRAM-34, UCL1684, and XE991 were dissolved in dimethylsulphoxide (DMSO), and further diluted in distilled water. Unless otherwise stated the substances were dissolved in distilled water. The concentration of DMSO in the bath was below 0.01% and to examine whether vehicle affected vascular contractility parallel control curves for the vehicle were obtained.
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2

Pharmacological Modulation of Signaling Pathways

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ADP, substance P, sodium nitroprusside, NS309, TRAM34 and apamin were obtained from Sigma-Aldrich and dissolved in ultrapure distilled water on the day of the study.
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3

Culturing Pancreatic Cancer Cell Lines

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Panc-1 cells were cultured in DMEM with 10% fetal calf serum; AsPC-1 and BxPC-3 cells were cultured in RPMI 1640 with 10% fetal calf serum, Capan-1 cells were cultured in IMDM with 20% fetal calf serum; Mia PaCa-2 cells were cultured in DMEM/F12 with 10% fetal calf serum and 2.5% horse serum; All media used for routine passaging contained GlutaMAX and 25 mM glucose. KCNN4 inhibitor rac-16 was synthesized as described before [26 (link)], NS309 and TRAM-34 were obtained from Sigma-Aldrich (St. Louis, MO, USA), diluted in DMSO to 10 mM stock solutions and stored in -20°C. Oligomycin (Oligo), FCCP (carbonyl cyanide-4 (trifluoromethoxy) phenylhydrazone), rotenone (R) and antimycin A (A) were obtained from Sigma-Aldrich (St. Louis, MO, USA), diluted in DMSO to 10 mM stock solutions and stored in -20°C. Saponin, TMPD (N,N,N′,N′-tetramethyl-p-phenylenediamine), and sodium ascorbate were obtained from Sigma-Aldrich, (St. Louis, MO, USA).
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4

Exogenous K+ Modulation of Vascular Function

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Exogenous K+ was added as an isotonic physiological salt solution in which all the NaCl was replaced with an equivalent amount of KCl. Concentrations of K+ used are expressed as final bath concentration. Ebselen (2-Phenyl-1,2-benzisoselenazol-3(2H)-one), L-NAME (NG-nitro-L-arginine methyl ester), Nordihydroguaiaretic acid (NDGA), papaverine HCl, PD 146176 (6,11-Dihydro[1]benzothiopyrano[4,3-b]indole), tempol (4-Hydroxy-2,2,6,6-tetramethylpiperidine 1-oxyl), TRAM-34 (1-[(2-Chlorophenyl)diphenylmethyl]-1H-pyrazole) and U46619 (9,11-Dideoxy-11α,9α-epoxymethanoprostaglandin F2α) were all obtained from Sigma (Poole, U.K.). Apamin and iberotoxin, from Latoxan (Valence, France). SLIGRL-NH2 (serine, leucine, isoleucine, glycine, arginine, leucine) from Auspep (Parkville, Australia). 8-iso PGF from Cayman-Europe (Tallinn, Estonia). tAUCB (trans-4-[4-(3-Adamantan-1-yl-ureido)-cyclohexyloxy]-benzoic acid) was a generous gift from Professor Bruce D. Hammock (University of California, Davis). All stock solutions (100 mM) were prepared in dimethylsulfoxide (DMSO) except L-NAME, apamin, iberiotoxin, papaverine and SLIGRL that were dissolved in 0.9% NaCl and tempol which was dissolved in ultrapure water. Vehicle controls were performed when necessary.
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5

Pharmacological Modulation of Ion Channels

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TRAM-34 (Sigma Aldrich, T6700) was dissolved in DMSO (10 mM stock solution, Sigma Aldrich, D2650) and used at final concentrations of 1 µM (patch-clamp) or 5 µM (all other experiments). The KCa3.1 channel opener 1-EBIO (1-ethyl-2-benzimidazolinone, 200 µM; Sigma Aldrich, SML0034) was diluted from a 20 mM stock solution in DMSO. Temozolomide (Sigma Aldrich, T2577) was dissolved in DMSO (100 mM stock solution) and used at final concentrations of 30 µM. Drugs were added to the cells 1 h before irradiation. Equivalent volumes of DMSO were used as control conditions. Except electrophysiology, all experiments were conducted in a blinded fashion until statistical analysis.
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Mitochondrial Respiration and Ion Channel Inhibitors

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DiBAC4(3) was obtained from Thermo Fisher Scientific. Rotenone, antimycin, oligomycin B and carbonyl cyanide 3-chlorophenylhydrazone (CCCP) (all from Sigma-Aldrich, Dorset, UK) were dissolved in DMSO as 1, 1, 6 and 10 mM stock solutions, respectively. K+ channels inhibitors, glibenclamide (Sigma-Aldrich), penitrem A (Alomone labs, Jerusalem, Israel), tram34 (Sigma-Aldrich), apamin (Tocris Bioscience, Abingdon, UK) and XE991 (Tocris Bioscience) were also prepared in DMSO as 10, 1, 10, 1 and 10 mM stock solutions, respectively. Other chemicals were obtained from Sigma-Aldrich or VWR (Leicestershire, UK).
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7

Reconstitution of Bioactive Compounds

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AVP, Leu8-OT, and Pro8-OT Anaspec 58863 were reconstituted in DMSO Sigma-Aldrich D4540. NS-1619 Sigma-Aldrich N170, Paxilline Sigma-Aldrich P2928, SKA-31 Sigma-Aldrich S5573, thapsigargin Sigma-Aldrich T9033, and TRAM-34 Sigma-Aldrich T6700 were reconstituted in DMSO. Pertussis toxin Sigma-Aldrich P7208 was reconstituted in ultrapure water with 5 mg/mL bovine serum albumin Fisher Scientific BP1600-100. Dynorphin A (1–13) amide (American Peptide 26-4-51A) was dissolved in 25 mM Tris at pH 7.4. Apamin (Sigma-Aldrich A1289) was reconstituted in 0.05 M acetic acid.
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8

Live Cell Imaging of Erythrocyte Invasion

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The sample was imaged in phenol red-free complete medium. For calcium experiments, the imaging medium was supplemented with 5 mM sodium pyruvate, 10 µM Trolox (Santa Cruz 53188-07-1) and 0.25 mM CaCl2. For experiments involving inhibitors, either 100 µg/mL R1 peptide (China Peptides), 1 µg/mL cytochalasin D (Sigma Aldrich C8273), or 10 µM TRAM34 (Sigma Aldrich T6700) were added to the imaging medium. For confocal microscopy, 200 µL of imaging medium and 30 µL of stained erythrocytes per well were loaded to eight-well plate (Ibidi 80826). Then, 5–10 µL of stained schizonts were added to the stained erythrocytes in the first well right before imaging. For LLSM, an acid-washed 5 mm round glass coverslip (Warner Instruments CS-5R) was attached to the bottom of each well before loading 200 µL of phenol red-free RPMI-HEPES and 30 µL of stained erythrocytes to the well. Then, 5–10 µL of stained schizonts were gently added to the top of the coverslip and left to settle on the coverslip for 15 minutes. A tweezer was used to attach the coverslip to the sample stage, then the coverslip was embedded in the microscope bath filled with 8 mL of imaging medium.
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9

Myocardial Infarction in Mice

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8-week-old male C57BL/6 mice (SLAC Laboratory Animals, China) were randomized to subject to permanent ligations of the left anterior descending branch of the coronary artery or to a sham operation without ligation, as described previously 13 (link). In brief, mice were anesthetized by 2% isoflurane inhalation and mechanically ventilated, the thorax was opened via left thoracotomy to expose the heart, and the coronary artery was ligated with a 6-0 silk suture. Successful occlusion of the vessel was confirmed both by the presence of myocardial blanching in the perfusion bed and dynamic changes of electrocardiogram (ECG). Sham-operated animals underwent the same procedure without ligation. Mice died within 24 h after surgery were excluded from the experiment. Immediately after MI induction or sham operation, mice were randomized to receive TRAM34 (120mg/kg, Sigma) or same volume of vehicle (corn oil, Sigma) subcutaneously every day until sacrifice.
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10

Apoptosis Induction Assay with TRAM-34

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TRAM‐34 (Wulff et al., 2000) was synthesized in‐house and dissolved in ethanol (Sigma Aldrich, Taufkirchen, Germany) to a stock solution of 5 mM and then diluted to a final concentration of 0.1, 1, or 10 μM. Apoptosis initiator staurosporine (Cell Signaling/New England Biolabs, Frankfurt, Germany) was dissolved in DMSO to a stock concentration of 1 mM and then diluted to a final concentration of 1 μM in cell culture medium.
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