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Acetylated histone 4 ac h4

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Acetylated histone 4 (Ac-H4) is a laboratory reagent that is used in research applications. It is a modified form of the histone protein H4, where specific lysine residues have been acetylated. Histones are fundamental components of chromatin, the complex of DNA and proteins that make up the structure of chromosomes. Acetylation of histones is a common epigenetic modification that can influence gene expression and chromatin structure.

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3 protocols using acetylated histone 4 ac h4

1

ChIP Analysis of Liver Histone Modifications

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Chromatin immunoprecipitation (ChIP) analysis was performed as described,23 with the following modifications. Before cross‐linking with 1% formaldehyde, livers were homogenized in PBS and cross‐linked with 0.5 M of di(N‐succinimidyl) glutarate for 45 minutes at room temperature. Immunoprecipitation of samples was performed overnight at 4°C with 3 µg of ChREBP (Novus), acetylated histone 4 (Ac‐H4; Millipore), acetylated histone 3 (Ac‐H3; Millipore), HNF4A (Santa Cruz), or normal rabbit immunoglobulin G (IgG) antibody (Santa Cruz). DNA was purified using the PCR Clean‐up Extraction Kit (Macherey‐Nagel), after which qPCR was performed. Primers are listed in Supporting Table S7.
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2

Chromatin Immunoprecipitation Assay with Modifications

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Chromatin immunoprecipitation (ChIP) analysis was performed as described,(23 (link)) with the following modifications. Before cross-linking with 1% formaldehyde, livers were homogenized in PBS and cross-linked with 0.5 M of di(N-succinimidyl) glutarate for 45 minutes at room temperature. Immunoprecipitation of samples was performed overnight at 4°C with 3 μg of ChREBP (Novus), acetylated histone 4 (Ac-H4; Millipore), acetylated histone 3 (Ac-H3; Millipore), HNF4A (Santa Cruz), or normal rabbit immunoglobulin G (IgG) antibody (Santa Cruz). DNA was purified using the PCR Clean-up Extraction Kit (Macherey-Nagel), after which qPCR was performed. Primers are listed in Supporting Table S7.
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3

Immunofluorescence Staining of Frozen Tissue

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Immunofluorescence staining was performed on frozen tissue sections. Prior to immunostaining, the tissue sections were fixed with 4% paraformaldehyde for 15 min and permeabilized for 15 min using 0.5% Triton X-100. The tissue sections were incubated for 1 h at room temperature with blocking solution (5% bovine serum albumin, 10% horse serum, and 0.05% Triton X-100) to block nonspecific binding and then incubated at 4 °C overnight with primary antibodies before being incubated for 1 h with the appropriate secondary antibody conjugated to Alexa Fluor 488 or CyTM3 (Jackson ImmunoResearch; West Grove, PA, USA) in the dark. DAPI was used to counterstain the nuclei. The samples were covered with mounting medium (cat. no. P36935; Invitrogen; Thermo Fisher Scientific), overlaid with cover slips, and examined under a confocal laser scanning microscope (Carl Zeiss MicroImaging). The primary antibodies used were as follows: Runx2 (1:100; cat. no. 20700-1-AP; Proteintech; Wuhan, China), histone deacetylase 1 (HDAC1; 1:100; cat. no. 5356; Cell Signaling Technology; Danvers, MA, USA), acetylated histone 3 (AcH3; 1:100; cat. no. 06–599; Millipore; USA), acetylated histone 4 (AcH4; 1:100; cat. no. 06–598; Millipore), and vimentin (1:100; cat. no. 92547; Abcam; Cambridge, MA, USA).
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