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26 protocols using anti igd

1

Multiparametric Flow Cytometry Analysis

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The fluorochrome labeled monoclonal antibodies (mAbs) anti-CD2-FITC, anti-CD3-Alexa 700, anti-CD3-PerCP, anti-CD4-V450, anti-CD4-PE, anti-CD8-APC Fluor 780, anti-CD8-PacBlue, anti-CD16-FITC, anti-CD20 PECy7, anti-CD19-V450, anti-CD20-APCCy7, anti-CD25-PEcy7, anti- CD28-PE, anti-CD28-FITC, anti-CD38-PE, anti-CD39-FITC, anti-CD45-PerCP, anti-CD56-APC, anti-CD57-FITC, anti-CD197-PECy7, anti-HLA-DR, anti-IgM, anti-IgD, anti-Ki67-FITC, anti-Bcl-2-PE, anti-TNF-α-PE, anti-TNF-α-APC, IFN-γ-PcpCy5.5, and IL-2-PECy7 were purchased from BD Biosciences (Franklin Lakes, NJ). Anti-CD45RA-QDOT655 and anti-CD69-FITC mAb were obtained from Invitrogen (Carlsbad, CA). Anti-CD8-Alexa780, anti-CD27-Alexa Fluor 700, and anti-CD38-eFluor 650NC were obtained from E-bioscience (San Diego, CA). Anti-CD24-PEcy7 and anti-CD279-PE (PD-1) were purchased from Biolegend (San Diego, CA).
Human EBV protein and CMV peptide pool of pp65 sequence consisting of 138 peptides (15 mers with 11 amino acid overlaps) was purchased from JPT Peptide Technologies (Berlin, Germany).
All patients were DSA-free with a calculated panel reactive antibody (PRA) ≤20% at enrollment. Patient samples were assessed for donor-specific alloantibody post-transplantation as described previously (18 (link)).
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2

Phenotyping B Cell Subsets

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After thawing, PBMC (2 × 106/ml) were stained for 20 min at room temperature with the following antibodies: anti-CD45 (Biolegend 368540), anti-CD19 (BD 555415), anti-CD27 (BD 555441) and anti-IgD (BD 555778) to measure naive (IgD + CD27-), IgM memory (IgD + CD27+), switched memory (IgD-CD27+), and DN (IgD-CD27-) B cells. Up to 104 events in the B cell gate were acquired on an LSR-Fortessa (BD) and analyzed using FlowJo 10.0.6 software. Single color controls were included in every experiment for compensation. Isotype controls were also used in every experiment to set up the gates.
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3

B Cell Subset Profiling and Analysis

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The following antibodies were used: anti-CD19 (BD 555415), anti-CD27 (BD 555441), anti-IgD (BD 555778) to measure naive (IgD+CD27−), IgM memory (IgD+CD27+) and switched memory (IgD-CD27+) B cells. B cell subsets were sorted on a FACS Aria (BD). Cell preparations were typically >98% pure. After sorting, mRNA was extracted from unstimulated B cell subsets to evaluate TNF-α expression by qPCR. Subsets were also stimulated 7 days (for AID mRNA expression, see above).
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4

Multiparametric Flow Cytometry Analysis

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Cells were harvested and washed with FACS buffer. For surface staining, the 1 × 106 cells in 100-μL single-cell suspension were stained with antibodies for 30 minutes in the dark at 4 °C. The following antibodies were used: live and dead cell stain FVS (BD Biosciences), anti-CD3, anti-CD4, anti-CD8, anti-CD103/ITGAE, anti-CD19, anti-CD27, anti-IgD, anti-CD38, and anti-CD138 (BD Biosciences, San Jose, CA); and anti-CD69, anti-CD18/ITGB2, anti-KLRG1 (BioLegend, San Diego, CA). For intracellular cytokine staining, immune cells were incubated in complete RPIM1640 containing 10% FBS and leukocytes activation cocktail with GolgiPlug (BD Biosciences) at 37 °C for 5 hours, and then surface-stained cells were fixed and permeabilized with Cytofix/Cytoperm solution (BD Biosciences) for 20 minutes at 4 °C. Subsequently, cells were stained with anti-GZMB, anti-GZMK, and anti-IgA (BD Biosciences) for 30 minutes at 4 °C. For staining TFs, cells were fixed and permeabilized with Transcription Factor Buffer Set (BD Biosciences). Briefly, after surface staining, cells were fixed and permeabilized for 50 minutes at 4 °C, then washed and stained with ATF5 (Abcam, Cambridge, UK) for 50 minutes at 4 °C. FCM was carried out using Celesta (BD Biosciences) and analyzed using FlowJo software (version 10.6.2, Tree Star).
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5

PBMC Mitochondrial Staining and Flow Cytometry

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Freshly isolated or thawed total PBMCs were pulsed with 20 nM of MitoTracker Green (Invitrogen, Inc.) in pre-warmed complete media (RPMI 1640 supplemented with 10% FBS and 1% L-glutamine) at 37 °C for 30 min. Cells were pelleted at 1,300 RPM for 10 min at RT, resuspended, and chased with 10 ml of pre-warmed complete media for 30 min at 37 °C. Cells were again spun at 1,300 RPM for 10 min, resuspended at 107 cells per 100 μl of PBS containing 0.5% BSA, 5% normal mouse serum, and 5% normal rat serum, and stained for flow cytometry with the following fluorochrome conjugated mouse anti-human monoclonal antibodies: anti-CD3, anti-CD24 (Invitrogen, Inc.), anti-CD19, anti-IgD, anti-CD27, anti-CD38 (BD Biosciences, Inc.). Analysis was performed using a BD LSRII. Sorting was performed on a FACS Aria II. Prior to each sort the FACS AriaII was calibrated with fluorescent beads to achieve a >99% sort purity.
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6

Profiling Tumor-Infiltrating Lymphocytes

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To analyze lymphoid populations within the tumor from one patient (patient 4), the fresh tumor tissue was finely minced with scissors and filtered through a nylon membrane, and a single-cell suspension was purified over a Ficoll–Hypaque density gradient. Cells were stained with the following anti-human antibodies: anti-αβTCR (IP26, eBioscience, San Diego, CA, USA), anti-CD8 (OKT8, eBioscience), anti-CD44 (IM7, eBioscience), anti-PD-1 (eBioJ105, eBioscience), anti-CD27 (O323, eBioscience), anti-CD20 (2H7, eBioscience), anti-CD1c (L161, eBioscience), anti-γδTCR (B1, BioLegend, San Diego, CA, USA), anti-CD4 (OKT4, BioLegend), anti-CD28 (CD28.2, BioLegend), anti-FAS (DX2, BioLegend), anti-ICOS (C398.4A, BioLegend), anti-IgM (MHM-88, BioLegend), anti-CD21 (B-ly4, BD Biosciences, San Jose, CA, USA), anti-CD23 (M-L233, BD Biosciences), and anti-IgD (Southern Biotech, Birmingham, AL, USA). Flow cytometry was performed using a BD FACS Canto II flow cytometer (BD Biosciences) and analyzed via FlowJo software (Tree Star, Ashland, OR, USA).
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7

Activation of Naïve B Cells

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PBMC were stained with Live/Dead detection kit (InVitrogen 1878898), anti-CD45 (Biolegend 368540), anti-CD19 (BD 555415), anti-CD27 (BD 555441) and anti-IgD (BD 555778) antibodies, and sorted using a FACS Aria (BD). Cell preparations were typically >98% pure. Naïve B cells (CD19+CD27-IgD+) were stimulated with CpG (5 μg/106 B cells in 1 ml) in the presence of an AffiniPure F(ab′)2 fragment of goat anti-human IgG + IgM (anti-Ig) (2 μg/106 B cells in 1 ml; Jackson ImmunoResearch Laboratories 109-006-127) for 1–10 days.
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8

Immunohistochemical Analysis of Spleen Sections

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Spleens sections were harvested, embedded in Tissue-Tek and ‘snap-frozen’ in dry ice and stored at −80 °C. Cryostat sections (8 μm in thickness) were prepared, air-dried and fixed in ice-cold acetone for 15 min. Sections were blocked with 5% rat serum and stained with the following antibodies: anti-IgG1, anti-IgD, anti-CD3 or anti-VCAM-1 antibodies (BD Biosciences PharMingen). Antibodies were diluted (1:50) in PBS containing 5% rat serum. Sections were further mounted with CYTOSEAL 60 (Electron Microscopy Sciences) and analysed with an Olympus FV1000 microscope (Olympus) using a × 20 objective, and the images were acquired with Olympus Fluoview Version 2.1 software.
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9

Multiparameter B Cell Immunophenotyping

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One hundred μl of blood were stained for 20 min at room temperature with the following antibodies: anti-CD19 (BD 555415), anti-CD27 (BD 555441), anti-IgD (BD 555778) to measure naive (IgD+CD27−), IgM memory (IgD+CD27+), switched memory (IgD−CD27+), late/exhausted memory (IgD−CD27−) B cells. After staining, red blood cells were lyzed using the RBC Lysing Solution (BD 555899), according to the manufacturer’s instructions. Up to 105 events in the lymphocyte gate were acquired on an LSR-Fortessa (BD) and analyzed using FACS Diva (BD) software. Single color controls were included in every experiment for compensation.
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10

Phenotyping of Human B Cell Subsets

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After thawing, PBMC (2 x 106/ml) were stained for 20 min at room temperature with the following antibodies: anti-CD45 (BioLegend 368540), anti-CD19 (BD 555415), anti-CD27 (BD 555441), and anti-IgD (BD 555778) to measure naive (IgD+CD27-), IgM memory (IgD+CD27+), switched memory (IgD-CD27+), and DN (IgD-CD27-) B cells. To measure membrane expression of markers associated with IA, B cells were also stained with anti-CD95 (BioLegend 305635), anti-CD21 (BioLegend 354911), anti-CD11c (BioLegend 301625), anti-CD86 (BioLegend 374215), anti-HLADR (BioLegend 307617), anti-PD1 (BioLegend 329907) antibodies. Up to 104 events in the B cell gate were acquired on an LSR-Fortessa (BD) and analyzed using FlowJo 10.0.6 software. Single color controls were included in every experiment for compensation. Isotype controls were also used in every experiment to set up the gates.
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