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38 protocols using endomucin

1

Immunostaining of Vascular Markers

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The following primary antibodies were used on sections at 1:100 dilution unless otherwise indicated: Claudin5 (Santa Cruz, sc28670), Connexin40 (Santa Cruz, sc20466), E-cadherin (BD Transduction, 610182), Endomucin (Santa Cruz, sc65495), GFP (Aves Labs, GFP-1020, 1:500), Nrp1 (R&D Sytems, AF566), Nrp2 (Cell Signaling, 3366s), PECAM-1 (BD Transduction, 553370), Podocalyxin (R&D Systems, AF1556), smooth muscle alpha (Abcam, ab14106), VE-cadherin (Santa Cruz, sc6458), VEGF (Abcam, ab14708), ZO1 (Invitrogen, 339100).
The following primary antibodies were used in whole mount staining at indicated dilutions: Connexin40 (Santa Cruz, sc20466, 1:100), E-cadherin (BD Transduction, 610182, 1:100), Endomucin (Santa Cruz, sc65495, 1:400), GFP (Aves Labs, GFP-1020, 1:500), PECAM-1 (BD Transduction, 553370, 1:400).
Secondary antibodies were used at 1:500 dilution: Alexa goat α mouse-488, Alexa goat α mouse-555, Alexa donkey α mouse-555, Alexa donkey α rabbit-555, Alexa chicken α rat-488, Alexa goat α rat-555, Alexa donkey α goat-555, Alexa donkey α goat-488, Alexa donkey α chicken-488.
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2

Confocal Imaging of Skull Bone Slices

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After the last time point of in vivo U‐LSOM imaging, mice were euthanized and their entire skull bone extracted and sliced as described.(27) Consecutive slices of 150 μm thickness were generated throughout the entire bone. For confocal imaging, slices covering or proximal to the coronal suture were selected. For immunostaining, individual slices were first incubated in blocking solution (0.2% Triton X‐100, 10% donkey serum in PBS) overnight at 4°C and then stained with primary antibodies (Endomucin, 1:100; Santa Cruz Biotechnology, Santa Cruz, CA, USA; Sc‐65495) in blocking solution for 3 days at 4°C. Tissues were then washed in 0.2% Triton‐X‐100/PBS and stained with secondary antibodies (Alexa Fluor 488 donkey anti‐rat immunoglobulin G [IgG] Antibody, 1:400; Thermo Fisher Scientific, Waltham, MA, USA; A‐21208) for another 3 days at 4°C in blocking solution. Immunostained slices were washed in 0.2% Triton‐X‐100/PBS overnight and incubated in RapiClear 1.52 for 12 to 16 hours. Confocal microscopy was performed with a 10× objective (HCX PL FLUOTAR; Leica, Wetzlar, Germany) on a Leica SP8 Leica confocal microscope. Image stacks (x: 3070–3080 μm, y: 9300–10300 μm, z: 125–145 μm) were acquired with a pixel size of 2.27 μm and a Z‐step size of 3 μm. Imaris software (Oxford Instruments plc, Abingdon, UK) was used to render confocal image stacks into 3D reconstructions (Fig. 3B).
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3

Placental Immunohistochemistry Staining

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Placentas were isolated in ice-cold PBS, fixed in 4% paraformaldehyde overnight, and embedded in an OCT:30% sucrose mixture. Cryosections were permeabilized in 0.5% Triton-X/0.1% Saponin/PBS (TSP) and blocked with 1% donkey serum in 0.1% TSP/PBS (PBS–TSP). Sections were incubated overnight at 4°C with primary antibodies - CD31 (BD Biosciences, 553370, 5μg/ml); ENDOMUCIN (Santa Cruz, sc-65495, 20μg/ml); CYTOKERATIN (DAKO Z0622, 10μg/ml); TPBPA (Abcam, ab104401, 10μg/μl); p57/CDKN1C (Santa Cruz, sc-1039, 20μg/μl); ERG (Abcam, ab110639, 0.17μg/ml)-, followed by incubation with secondary antibodies (Alexa488-donkey-α-rat, Alexa488-donkey-α-rabbit, Alexa488-donkey-α-goat and Alexa594-donkey-α-rabbit, Jackson Immunoresearch, 1.5 μg/ml), and mounted with Prolong Gold + DAPI. Images were acquired using an Axioplan 2 imaging microscope with 20X and 40X objectives.
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4

Immunofluorescence Staining of Bone Cryosections

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Long bones were fixed in 4%PFA, decalcified in 0.5 M EDTA, embedded in gelatin and frozen at −80 °C [27] (link). Immunofluorescence was performed on 30 µm thick cryosections (three non-consecutive levels) for each bone. Tissue sections were permeabilized for 30 min in 0.3% Triton X-100, where appropriate Streptavidin/Biotin blocking (Vector Labs) was performed. Cryosections were incubated for 1 h with primary antibody against murine Endomucin (2 µg/mL, Santa Cruz Biotechnology), Osteopontin (R&D Systems) or human CD29 and CD59 (10 µg/mL, BioLegend). Tissue sections were washed with PBS and incubated with either a fluorescently-conjugated (5 µg/mL) or biotinylated secondary (7.5 µg/mL) antibody followed by fluorescently-conjugated streptavidin. Tissue sections were washed with PBS and incubated with either a fluorescently-conjugated or biotinylated secondary antibody followed by fluorescently-conjugated streptavidin. All incubations were carried out at ambient temperature and ProLong Gold Antifade reagent (Thermo Fisher) to mount the glass coverslips. Images of the immunofluorescence staining were captured with Nikon A1 (Nikon Instruments Europe) or Zeiss LSM 880 AiryScan (Carl Zeiss Microscopy GmBH) confocal systems.
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5

Endomucin Expression in Murine Tibiae

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Tibiae from growing 3-week-old male mice were decalcified in EDTA for 10 days, embedded in paraffin, and sectioned. Specimens were incubated in blocking buffer (5% bovine serum albumin (BSA), 5% goat serum in Tris-Buffered Saline-Tween 20 (TBST)) for one hour at 25°C. Blocking buffer was replaced with the Endomucin (Santa Cruz, sc-65495 AF488) primary antibody solution (1:500 in blocking buffer) overnight at 4°C. Specimens were washed in PBS three times for 10 minutes each and then imaged using a Zeiss LSM 900 confocal microscope.
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6

Immunofluorescence Labeling of Paraffin-Embedded Tissues

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Tissues were fixed for 24 h and paraffin embedded prior to sectioning for immunofluorescence labeling. Tissue sections were deparaffinized by xylene, rehydrated with serial ethanol steps, and permeabilized with 0.1% Triton solution in PBS. Tissues were blocked with 20% Aqua Block (East Coast Bio) solution in PBS and incubated with primary antibodies against Neurotensin (14670S, Cell Signaling Technology), UCP-1 (ab233107, Abcam), Lyve1 (AF2125, R&D Systems), or Endomucin (sc-65495, Santa Cruz) overnight. Following fluorescent secondary antibody labelling, tissue sections were mounted with DAPI Fluoromount-G (SouthernBiotech, Birmingham, AL). Representative images were taken with an Olympus BX51 fluorescence microscope and Olympus Q5 camera using CellSens Standard Version 1.9 software.
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7

Kidney Tissue Immunofluorescence Staining

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Kidney sections were cut 5 μm sagittally and were deparaffinized, rehydrated, and permeabilized with 0.1% Triton solution. The sections were blocked with 10% AquaBlock (EastCoastBio, North Berwick, Maine, USA) for 1 h at room temperature and were then incubated with the following primary antibodies at 4 °C overnight: goat polyclonal Podoplanin (R&D Systems, Minneapolis, Minnesota, USA), and rat monoclonal Endomucin (Santa Cruz Biotechnology, Dallas, Texas, USA). Alexa Flour 488 or 594 secondary antibodies (Life Technologies, Carlsbad, California, USA) were used for visualization. Antibodies used are listed in Supplemental Table 1, http://links.lww.com/HJH/B236. Slides were mounted with Prolong Gold antifade reagent with DAPI (Thermo Fisher Scientific, Waltham, Massachusetts, USA) and imaged using an Olympus BX51 fluorescence microscope with Olympus Q5 camera. Images were captured at 20× magnification using the Olympus CellSens software (Olympus, Shinjuku, Tokyo, Japan).
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8

Tumor Vascularization Immunofluorescence

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Fresh-frozen 7μm tumor sections were incubated with primary antibodies: endomucin (Santa Cruz Biotechnology), NG2 (Millipore), αSMA (Sigma Aldrich), Collagen IV (COSMO bio), VEGFR-1 (Abcam). Alexa Flour conjugated 588 or 594 secondary antibody (Invitrogen) were used and slides mounted with Vectashield with DAPI (Vector Laboratories).
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9

Immunohistochemical Tissue Analysis

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Formalin-fixed tissues were embedded in paraffin and cut in 6 μm sections. Sections were evaluated by H&E and immunohistochemical analysis using antibodies specific for vimentin (Phosphosolutions), endomucin, E-cadherin, (Santa Cruz), phospho-histone H3 (Upstate), cleaved caspase-3 (Cell Signaling). Negative controls included omission of primary antibody and immunofluorescence evaluation was conducted as described (12 ). Necrotic area was determined by quantification of percent viable tumor area on low magnification of tumor sections by H&E.
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10

Cryosectioning and Immunostaining of Mouse Tibiae

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The tibiae were isolated from mice and then fixed in 4% PFA overnight at 4 °C. After 3 days of decalcification in 14% EDTA, the tibiae were immersed in 30% sucrose overnight to dehydrate and then embedded in O.C.T Compound (Tissue-Tek (Torrance, CA, USA)). Sections at a thickness of 10 μm were prepared using a cryostat (Leica (Wetzlar, Germany), CM1950). The section incubated with the primary antibody overnight of Aggrecan (Sigma-Aldrich, AB1031, 1:50), Endomucin (Santa Cruz (Santa Cruz, CA, USA), sc-65495, 1:50), and Osx (Abcam (Cambridge, UK), ab22552, 1:200). The secondary antibody goat anti-rabbit Alexa Flour 488 or goat anti-rat Alexa Flour 488 (Thermo-Fisher Scientific (Waltham, MA, USA), 1:200) was used to incubate for one hour at room temperature. A Click-It EdU Alexa Flour 488 Imaging Kit (Thermo-Fisher Scientific, C10337) was used to detect the expression of EdU. All immunofluorescence staining sections were observed using an Olympus FV3000 confocal microscope.
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