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10 protocols using simple stain rat max po

1

Immunohistochemical Analysis of Tissue Adipocytes

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Tissue was fixed in 10% formalin neutral buffer solution (Wako, Osaka, Japan), embedded in paraffin, cut into 3.5-µm sections and stained with hematoxylin and eosin (HE). Immunohistochemistry (IHC) was performed with primary antibodies—rabbit anti-mouse CD4 antibody (Cell Signaling Technology, Danvers, MA, USA), rabbit anti-mouse CD8a antibody (Cell Signaling Technology), rabbit anti-Ly6G antibody (Abcam, Cambridge, UK) and rat anti-Ly6C antibody (abcam)—and secondary antibodies—goat anti-rabbit immunoglobulins/biotinylated (Dako, Santa Clara, CA, USA) and simple stain MAX-PO (rat) (Nichirei Biosciences, Tokyo, Japan). The adipocytes were observed with 400× HE and counted, and the area was measured using ImageJ and Adiposoft (NIH, Bethesda, MD, USA).
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2

Immunohistochemical detection of SFTSV antigen

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Tissues fixed with neutral-buffered formalin (10% v/v) were processed and embedded in paraffin according to standard procedures. The embedded tissues were sectioned at 5 μm and dried overnight at 42°C before staining with hematoxylin and eosin. To detect the viral antigen by immunohistochemistry, a rabbit polyclonal antiserum against SFTSV N protein (kindly provided by Dr. Shigeru Morikawa, National Institute of Infectious Diseases, Japan) was used as the primary antibody. Different types of cells were identified immunohistochemically as follows: white blood cells [CD45R (B220)], immature B cells (Pax5), T cells (CD3e), macrophages (IbaI), and reticular cells (gp36), which were stained with Rat anti-CD45R (BD Biosciences), Rabbit mAb PAX5 (Cell Signaling), Goat anti-CD3-𝜀 (Santa Cruz), Rabbit anti-Iba-1 (Wako), and Hamster anti-Podoplanin (Novusbio), respectively. Each antigen was visualized with Envision++ system HRP Rabbit (DAKO), Simple stain AP Rabbit, Simple Stain MAX PO Rat (Nichirei), ImmPress HRP anti-goat IgG (Vector), or Biotinylated anti-Hamster IgG (Vector) with SAB-PO (Nichirei) in an appropriate combination according to the manufacturer’s protocol.
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3

Quantifying Thyroid Cell Apoptosis and Proliferation

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Thyroid tissues were fixed in 10% formalin and embedded in paraffin. The 4-μm-thick sections were stained with hematoxylin and eosin (HE). The colloid areas were measured using the particle analysis function of ImageJ software (http://imagej.nih.gov). TUNEL staining was performed with the ApopTag Peroxidase In Situ Apoptosis Detection Kit (Merck KGaA, Darmstadt, Germany), following the manufacturer's protocol. For immunohistochemical staining for Ki-67, a polyclonal rabbit antibody to Ki-67 (ab15580, at 1:5,000 delusion) and Simple Stain Rat Max-PO (Nichirei Bioscience, Tokyo, Japan) were used. The TUNEL-positive and Ki-67-positive cells were counted in five fields per rat.
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4

Immunohistochemical Analysis of PDGF-Rβ

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Deparaffinized sections were incubated with anti-PDGF-Rβ primary antibody (rabbit polyclonal, SC339, Santa cruz, Calfornia, USA) and then incubated with peroxidase-conjugated secondary antibody (simple stain rat MAX-PO, Nichirei, Tokyo, Japan). DAB substrate solution was added to produce brown precipitate. The sections were counterstained with haematoxylin. Localization and orientation of the PDGF-Rβ-positive cells were analyzed in the AC and PDGF-BB groups.
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5

Immunohistochemical Analysis of Testis and Epididymis

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Paraffin-embedded sections (4-μm thickness) from testis and epididymis samples fixed in 4% PFA/PBS were subjected to hematoxylin and eosin or immunohistochemical staining. For
immunohistochemistry, deparaffinized tissue sections were treated with 10% hydrogen peroxide in methanol at room temperature for 5 min to quench endogenous peroxidase activity. Antigen
retrieval was achieved by autoclaving sections in citrate buffer (pH 6.0) for 20 min. Sections were blocked with 5% normal goat serum (NGS) in PBS for 20 min at room temperature.
Subsequently, sections were incubated overnight at 4°C with either anti-vimentin (clone V9, undiluted, ready-to-use; DAKO-Agilent Technology, Santa Clara, CA, USA) or anti-DTSP (diluted
1:2,000 in 5% NGS/PBS) antibodies. Primary antibodies were detected using an HRP-conjugated secondary antibody (Simple stain rat MAX-PO, undiluted, ready-to-use; Nichirei, Tokyo, Japan).
After incubation with an HRP-conjugated secondary antibody, 3-3ʹ-diaminobenzidine served as the chromogen. Nuclei were counterstained with hematoxylin. Immunostained sections were observed
under a microscope equipped with a digital camera (DP73).
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6

Immunohistochemical Tissue Analysis Protocol

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Procedures for immunohistochemistry, including antibodies used as primary antibodies, are
summarized in Table 1 Procedure and Primary Antibodies Used in Immunohistochemical Analysis. Formalin-fixed and paraffin-embedded tissues were deparaffinized and
rehydrated through graded alcohols. Endogenous peroxidase activity was quenched with 3%
H2O2, followed by heat-induced antigen retrieval in a microwave at
95°C with citrate buffer at pH 6.0. After blocking endogenous peroxidase activity,
sections were treated with serum-free protein block (Dako Japan, Tokyo, Japan) for 30 min
at room temperature. Sections were then washed with washing buffer (Dako Japan, Tokyo,
Japan) and reacted with the primary antibody overnight at 4°C. Sections were washed and
treated by applying drops of Simple Stain Rat MAX PO (MUITI) (Nichirei Biosciences, Tokyo,
Japan) to sections reacted with S-100, αSMA, CD10, Iba-1, and proliferating cell nuclear
antigen (PCNA) primary antibodies for 10 min at room temperature or by applying drops of
Simple Stain Mouse MAX-PO (G) (Nichirei Biosciences) to sections reacted with desmin for
30 min at room temperature. After washing sections with washing buffer, reactions were
visualized using 3,3′-diaminobenzidine (DAB) as a chromogen. Sections were lightly
counterstained with hematoxylin.
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7

Immunohistochemical Staining of Calcitonin and Ki-67

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Immunohistochemical staining was performed for calcitonin and Ki-67, as described previously21 (link). Anti-calcitonin polyclonal (Nichirei Bioscience, Tokyo, Japan) and anti-Ki-67Monoclonal (MIB-5, Agilent, Santa Clara, CA, USA) antibodies diluted 1:50 in Dako Real™ antibody diluent (Agilent) were used. Simple Stain Rat Max-PO ® (Nichirei) or LSAB®2 system-HRP (Agilent) were used for calcitonin or Ki-67 staining, respectively, according to the manufacturer’s instructions. Ki-67-positive cells were counted in at least five fields per rat from four to six rats for each data point at 1, 6, and 12 months after irradiation. Images were captured using a Nikon Camera Control Unit DS-L2 (Nikon, Tokyo, Japan) (400× magnification). The Ki-67-positive cells in the normal and tumor regions (Ki-67 index) were counted under the same conditions 18 months after irradiation.
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8

Comprehensive Antibody Staining Protocol

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Antibodies and reagents used for histological and biochemical experiments are as follows. Primary antibodies specific for: AIM (Rab1 rabbit polyclonal for mice western blot; #35 and #36 (for mouse urinary AIM) were established in our laboratory, Kim-1 (rat polyclonal for mice IHC, R&D Systems). Secondary antibodies and related reagents are: goat anti-rabbit IgG HRP (Invitrogen), streptavidin HRP (BD), G-block (Genostaff) and Simple Stain Rat MAX PO (NICHIREI BIOSCIENCES). Antibodies for flowcytometry are: Brilliant Violet 650 rat anti-mouse CD45 Antibody (30-F11, BioLegend), BV605 Rat anti-mouse Ly-6G (RB6-8C5, BD), BV510 rat anti-CD11b (M1/70, BD), BV421 rat anti-mouse F4/80 (T45-2342, BD), APC rat anti-mouse TNFα (MP6-XT22, Thermo Fisher Scientific), PE rat anti-mouse IL-6 (MP5-20F3, BD), APC-eFluor 780 rat anti-mouse IL-1β (Pro-form) (NJTEN3, Thermo Fisher Scientific), APC-eFluor 780, Thermo Fisher Scientific), FITC rat anti-mouse CCL2 (MCP-1) (2H5, Thermo Fisher Scientific), Purified rat anti-mouse CD16/CD32 (2.4G2, Mouse BD Fc Block).
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9

Histological Analysis of Pulmonary Arterioles

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Paraffin-embedded rat lung tissues were sliced into 3-µm sections. To assess the muscularization of the pulmonary arterioles, hematoxylin and eosin (HE), Elastica van Gieson (EVG), and alpha-smooth muscle actin (α-SMA) (1:100 dilution, ab5694; Abcam, Cambridge, MA, USA) were used to stain serial slices. Fifty small arterioles (with diameters <100 µm) were counted and classified as fully muscularized (75%-100%), partially muscularized (25%-75%), and non-muscularized (<25%) based on α-SMA positive cells surrounding the vessels (Chai et al., 2015) . Immunohistochemistry (IHC) was performed on serial sliced 3-µm paraffin sections.
After deparaffinization and antigen activation, they were incubated with phosphorylated-p65 antibody (1:100 dilution, ab194726; Abcam) or CD68 antibody (1:50 dilution, sc-20060; Santa Cruz Biotechnology) overnight at 4℃. They were treated for 30 min at room temperature with Simple Stain Rat MAX-PO (Nichirei Biosciences, Tokyo, Japan) as the secondary antibody. Simple Stain AEC (Nichirei Biosciences) was utilized for staining.
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10

Immunohistochemical Analysis of Submandibular Gland

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Submandibular gland tissue samples were fixed in 4 % buffered paraformaldehyde (pH 7•4; Wako Pure Chemical Industries) for 24 h and embedded in paraffin. Serial 4-mm sections were cut and stained with haematoxylin and eosin for immunohistochemistry. Immunohistochemical analysis was performed using simple stain rat MAX-PO (Nichirei Biosciences, Inc.). Slides were placed in 10 mM-sodium citrate, pH 6•0, and microwaved for 20 min for antigen retrieval. Then 0•2 % Triton w X-100 (MP Biomedicals, LLC) treatment was performed for 10 min. Slides were pre-incubated in 3 % H 2 O 2 in methanol for 15 min. Sections were incubated with anti-rat IgA rabbit polyclonal antibody (1:300; Abbiotec, LLC) for 2 h at room temperature. After washing with PBS, sections were incubated with the secondary antibody, horseradish peroxidase-labelled anti-rabbit IgG with amino acid polymer (Nichirei Biosciences, Inc.), for 30 min at room temperature. Colour was developed using 0•02 % 3,3 0 -diaminobenzidinetetrahydrochloride (Wako Pure Chemical Industries Limited) and 0•0003 % H 2 O 2 in Tris-buffered saline for 6 min. Sections were then counter-stained with hematoxylin. Non-immunised rabbit IgG was used instead of primary antibody for negative controls.
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