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Eclipse 80i upright microscope

Manufactured by Nikon
Sourced in Japan, United States

The Nikon Eclipse 80i is an upright microscope designed for laboratory applications. It features a sturdy construction and advanced optical components to provide high-quality images. The Eclipse 80i is capable of a wide range of magnification levels to accommodate various sample types and research needs.

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38 protocols using eclipse 80i upright microscope

1

Immunohistochemical Staining of Tissue Sections

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IHC staining was performed after tissue deparaffinization by clearance in xylene and hydration through graded ethanol series as described previously.17 (link) Sections were stained using primary human antibodies targeted against anti-IFITM1 (Santa Cruz Biotechnology, Cat#SC-374026), anti-MUC1 (Santa Cruz Biotechnology, Cat#SC-7313), anti-P-STAT1 (Santa Cruz Biotechnology, Cat#SC-8394) and HRP-conjugated biotinylated secondary antibodies (Cell Signaling, Cat#7076S and Cat#7074S). Immunoperoxidase signal was produced using 3,3’-Diaminobenzidine (DAB) (Vector Laboratories, Cat#SK-4100) and amplified using the Vectastain® Elite ABC Kit (Vector Laboratories, Cat#PK-4000). Tissue sections were counter stained using hematoxylin and mounted in xylene. Slides were imaged on a Nikon Eclipse 80i Upright Microscope in the Imaging Core of The University of Kansas Medical Center.
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2

Immunofluorescence and Oil Red O Staining

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All samples were fixed in 4% paraformaldehyde solution for 10 min and permeabilized with 0.1% Triton X-100 for 5 min prior to 1 h blocking with 5% BSA in PBS. Cell samples were incubated overnight with primary antibodies, mouse monoclonal anti-human cardiac myosin heavy chain (1∶400, Abcam) at 4°C followed by washing with PBS. Samples were then labeled with Alexa Fluor 488 goat anti mouse IgG (1∶400, Molecular Probes). 4′-6-diamidino-2-phenylindole (DAPI) (1∶400, Chemicon) was added to counterstain the cell nuclei. For osteocalcin staining, cells were stained with primary antibodies, rabbit polyclonal anti-osteocalcin (1∶200, Santa Cruz Biotechnology) followed by staining with Alexa Fluor 568 goat anti rabbit IgG (1∶100, Invitrogen). Images were captured with an Eclipse 80i upright microscope (Nikon) using 20x and 10x objective lenses and ImageJ 1.44f software was used for image analysis. For oil Red O dye staining, cell samples were fixed with 4% paraformaldehyde for 10 min and stained with oil red O dye solution for 15 min. Cell samples were subjected to scrutiny under an inverted microscope (Nikon eclipse TS100) using 20x and 10x objective lenses to observe oil globules formation.
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3

Congo Red Staining Protocol for Amyloid

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Supernatant protein concentration was standardized to 5 µg/10 µL. Samples were well‐suspended prior to applying 10 µL, carefully in a drop‐wise fashion, to a clean slide. Slides were heat‐fixed on a warm hot plate to provide consistency between results obtained among samples both with and without bacteria. Light sensitive Congo Red (Fisher Scientific; Hampton, NH, cat. no. C580‐25) was prepared in ultrapure water at a concentration of 3 mg/mL, vortexed thoroughly, and passed through a 0.22 µm syringe filter to disrupt any remaining clumps. Slides with fixed and cooled samples were flooded with Congo Red for 5 minutes, rinsed, destained with 70% ethanol for 3 minutes, rinsed again, and allowed to air dry while being protected from light. Slides were imaged on a Nikon Eclipse 80i upright microscope under (1) bright‐field (Crystal Violet control and Congo Red), and (2) with a Nikon rotatable polarizer and analyzer for the cross‐polarized light necessary to ascertain birefringence (Congo Red).
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4

Acoustic Cell Setup for Ultrasound-Propelled Nanomotors

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The acoustic cell setup consisted of a piezoelectric transducer
(Ferroperm PZ26 disk 10 mm diameter, 0.5 mm thickness) responsible for the
generation of ultrasound waves, attached by conductive epoxy glue to the bottom
center of a steel plate (50 mm × 50 mm × 0.94 mm3);
then the steel plate was covered with a 240 µm kapton tape protective
layer and a sample reservoir at the center (5 mm). A glass slide was used to
cover the reservoir for ultrasound reflection and to protect the sample. The
continuous ultrasound sine wave was applied via a piezoelectric
transducer, through an Agilent 15 MHz arbitrary waveform generator, in
connection to a home-made power amplifier. The applied continuous sine wave form
had a frequency of 2.56 MHz and 6 V voltage amplitude.
Videos were captured using Cool SNAP HQ2 camera, 20× and 40× objectives
(unless mentioned otherwise) and acquired at the frame rate of 10 using the
Metamorph 7.1 software (Molecular Devices, Sunnyvale, CA). A Nikon Eclipse 80i
upright microscope was also used to capture time course images of the
morphological changes of AGS cells treated with US-propelled pH-responsive
polymer-CASP-3@nanomotors and other conditions.
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5

Immunofluorescence Microscopy Protocol

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Cells were grown on coverslips at 70% confluency and then rinsed in PBS and fixed for 15 min in 4% paraformaldehyde/PBS at room temperature. Fixed cells were washed in PBS and quenched for 10 min in PBS/50 mM glycine, saturated in PBS containing 1 mg ml−l BSA (blocking buffer) and permeabilized in PBS/0.05% saponin/1 mg ml−1 BSA (incubation buffer, IB). Cells were incubated for 1 h with the primary antibody diluted in IB, washed three times in IB and incubated with the corresponding secondary antibodies diluted in IB for 45 min. Coverslips were washed three times with IB and then mounted in DABCO medium and examined on an Eclipse 80i Upright Microscope (Nikon) equipped with a CoolSNAP HQ2 CCD Camera, a Piezo Flexure Objective Scanner and × 100 Plan Apo objective (1.4 numerical aperture CFI (chrome-free infinity)). Images are maximum-intensity z projections of three-dimensional image stacks acquired every 0.2 μm using the Metamorph software (MDS Analytical Technologies, Sunnyvale, CA).
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6

Immunofluorescence Staining of Frozen Mouse Tissues

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Dissected mouse tissues were embedded in OCT media, snap frozen, and stored at −80°C. Sections (10 μm) were cut using a Micron HM505 N cryostat, placed onto glass slides, air dried for 10 min, and then fixed in 4% paraformaldehyde for 10 min. Slides were washed twice in cold 1× PBS buffer and then blocked with the appropriate serum-blocking buffer at room temperature for 1 h. Slides were incubated overnight at 4°C with primary anti-Zhx2 antibody (1:250; #96083; Abcam), washed twice with 1× PBS, and incubated with TRITC-conjugated secondary antibody (1:200; #4010-13; Southern Biotech) for 1.5 h at room temperature. Slides were mounted (Dako mounting media; #2013-05), covered, and imaged with a Nikon Eclipse 80i upright microscope with NiS Elements software.
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7

Microscopy Imaging and Analysis

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Immunohistochemistries were scored visually on an Olympus BX50F. CBAs and live hippocampal neurons were scored visually by two independent observers using a Nikon eclipse 80i upright microscope. Confocal images were acquired with a Zeiss LSM 700 using the 40× and 63× (oil) objectives. Images were processed using ImageJ.
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8

Microscopic Analysis of Fungal Hyphae

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The conidia were inoculated to cellulose agar plates with coverslips inserted to
the medium. Images of hyphae on cellulose agar plates or mycelia in liquid
minimal medium were acquired with Eclipse 80i upright microscope (Nikon, Japan),
and analyzed using the ImageJ 1.8.0 software (Schneider et al., 2012 (link)). The
Lhgu (length of a hyphal growth unit) value was
calculated by dividing the hyphal length by the number of tips (Quintanilla et
al., 2015 (link)). Fifty hyphae were measured
for each strain.
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9

Immunofluorescence Analysis of Kinesin and Adaptin in MNT-1 Cells

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MNT-1 cells grown on coverslips were incubated for 3 days in medium containing peptides (10 µM). Media containing peptides were renewed every day. Coverslips fixed in 100% glacial methanol for 5 s were washed 5 times in distilled water and incubated in PBS/1 mg/mL BSA (incubation buffer, IB). Fixed cells were incubated for 1 h with mouse monoclonal anti–γ-adaptin (Sigma-Aldrich, clone 100/3) and rabbit polyclonal to KIF13A (Bethyl Laboratory, Inc., A301-077A) diluted in IB, washed three times in IB, and incubated with the corresponding secondary antibody (Alexa Fluor, Invitrogen) for 30 min. Cells were washed twice in IB and once in PBS before mounting the coverslips in DABCO medium (Invitrogen) and examining on an Eclipse 80i Upright Microscope (Nikon, Tokyo, Japan) equipped with a CoolSNAP HQ2 CCD Camera, a Piezo Flexure Objective Scanner and 100× Plan Apo objective (1.4 NA CFI).
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10

Laser Scanning Confocal Microscopy

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Laser scanning confocal microscopy was performed using a C1 confocal scan head fitted to an Eclipse 80i upright microscope (Nikon Instruments). A Nikon plan apochromatic 20× objective (1.0-mm working distance, 0.75 numerical aperture, air immersion, 170-μm coverslip correction) was used for all experiments. The objective was heated using a flexible, resistive heater to prevent condensation onto the objective for temperature-dependent experiments.
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