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11 protocols using c57bl 6n mice

1

Genotyping of Kmt2c Mutant Mice

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The experimental protocols were approved by the Wako Animal Experiment Committee of RIKEN. Kmt2c heterozygous mutant mice were maintained by breeding Kmt2c +/fs mice with wildtype C57BL6/N mice (CLEA Japan, Inc.) in a 12 h:12 h light-dark cycle. The mice for behavioral tests were obtained by in vitro fertilization using sperms of the heterozygous mutant mice and eggs derived from C57BL6/N mice (CLEA Japan, Inc.). Genotyping of all mutant mice was performed using genomic DNA derived from tail tips as previously reported [18] . Briefly, tail biopsies were conducted on postnatal days 14-21, and each tail tip was incubated in 100 μL of lysis buffer (25 mM NaOH, 0.2 mM EDTA) at 95 °C for 20-30 min. An equal volume of 40 mM TRIZMA hydrochloride was added to the lysate after incubation and the mixture was vortexed briefly. Afterward, 1 μL of the mixture was diluted with water 2.5-fold and was PCR-amplified under the conditions shown in Supplementary Table 1. The PCR products derived from wildtype and mutant allelles were discriminated by agarose gel electrophoresis or Sanger sequencing by an ABI 3730xl sequencer (Life Technologies, CA, USA) using BigDye Terminator V3.1 (Thermo Fisher Scientific, MA, USA) (Supplementary Table 1).
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2

Transgenic Mouse Models for T Cell Research

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C57BL/6N mice were purchased from CLEA JAPAN. Cd3ϵ-/- and OT-I-TCR transgenic mice have been described previously (31 (link)). All mice had a C57BL/6 genetic background. Male mice, aged 8 weeks and weighing 20–25 g, were used under cohousing conditions in specific pathogen-free facilities. All animal experiments were approved by the Animal Research Committee and Ethics Committee of Keio University School of Medicine.
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3

Generating CRISPR sgRNA for Kmt2c

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To obtain single guide RNA (sgRNA) for the recognition of the Kmt2c locus, oligomers were first generated by annealing of the following primers: forward primer, 5′-CACCGGAATGGACCACCACCTCGAG-3′, and the reverse primer, 5′-AAACCTCGAGGTGGTGGTCCATTCC-3′. The oligomers were integrated into the BbsI site downstream of the U6 promoter of the pSpCas9(BB)-2A-GFP vector (PX458) (Addgene, MA, USA). This integration step followed our previous reports [17, 18] . After the integration, the sgRNA for the microinjection into the fertilized eggs was transcribed by MEGAshortscript Kit (Life Technologies, Carlsbad, CA, USA) using the generated sgRNA-SpCas9-GFP all-in-one vector as a template. A mixture of sgRNA (50 ng/μl) and Cas9 mRNA (100 ng/μl, Merck Millipore, MA, USA) was microinjected into the cytoplasm of fertilized eggs obtained from C57BL6/N mice (CLEA Japan, Inc., Tokyo, Japan). The injected eggs were transferred into the oviducts of pseudopregnant ICR female mice. Whole exome sequencing was performed to screen for possible off-target mutations using genomic DNA purified from tail samples of F1 mutant mice with the GenElute Mammalian Miniprep kit (Merck Millipore). We validated the introduction of novel insertion/deletion of nucleotides after the filtering as previously reported [18] .
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4

Dietary Effect on Obesity in Mice

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All animal experimental procedures were reviewed and approved by the Institutional Animal Committee at the Department of Veterinary Science of Osaka University School of Medicine and performed in accordance with guidelines for animal experimentation at research institutes (Ministry of Education, Culture, Sports, Science and Technology, Japan), guidelines for animal experimentation at institutes (Ministry of Health, Labor and Welfare, Japan), and guidelines for the proper conduction of animal experiments (Science Council of Japan). Seven or eight-week-old male C57BL/6J mice and 8-week-old female C57BL/6N mice were purchased from CLEA Japan Inc. and housed in a temperature-, humidity- and light cycle-controlled facility (23 ± 1 °C; 55 ± 10%; light, 8:00–20:00; dark, 20:00–8:00). Mice had free access to food and water except for mice under pair-feeding condition. C57BL/6J mice were fed either a ND (MF, 12.8 kcal% fat; Oriental Yeast Co., Ltd) or a HFD (D12492, 60 kcal% fat; Research Diets Inc.), and C57BL/6N mice were fed a ND.
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5

DSS-Induced Colitis in Female C57BL/6N Mice

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Fifty-six female C57BL/6N mice (CLEA Japan, Inc., Tokyo, Japan) aged 11–12 weeks were used in our study. Male mice were excluded in the current study due to their high mortality rates from DSS-induced colitis [31 (link)]. The mice were housed in a pathogen-free environment at a temperature of approximately 23 ± 3 °C, relative humidity of 55 ± 10%, and a 12 h light/dark cycle. The mice had free access to their diet and drinking water throughout the experiment. The ethics approval document of this animal experiment was provided on 6 February 2018.
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6

Generating Blastocysts from Normal and Parthenogenetic Zygotes

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Both mouse normal and PG blastocysts were obtained from C57BL/6N mice (Clea Japan). Normal zygotes were isolated by in vitro fertilization of ovulated oocytes. PG zygotes were constructed by stimulating cumulus-free oocytes with strontium chloride solution, which contains cytochalasin B to prevent extrusion of the second polar body. Normal and PG zygotes were cultured to the blastocyst stage in sperm-free KSOM medium (Merck Millipore) for 3 and 4 days, respectively. Each blastocyst was evaluated for expansion, ICM, and trophectoderm appearance to select non-arrested blastocysts.
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7

C57BL/6N Mice Care and Use

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C57BL/6N mice were obtained from Clea Japan, Inc. (Tokyo, Japan). All research was conducted in accord with the Public Health Service policy on the Humane Care and Use of Laboratory Animals. Maintenance of the animal facility and use of animals was in full compliance with the Ethics Committee for animal experiments of the National Center for Global Health and Medicine, Tokyo, Japan.
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8

CRISPR-Cas9 Engineered Mouse Generation

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The sgRNA was first transcribed using MEGAshortscript Kit (Life Technologies, Carlsbad, CA, USA) and the sgRNA-SpCas9-GFP all-in-one vector as a template. A mixture of sgRNA (50 ng/μl), Cas9 mRNA (100 ng/μl, Sigma) and single strand oligo-deoxynucleotide (ssODN) (200 ng/μl, Supplementary Material, Table S2B) was microinjected into the cytoplasm of fertilized eggs obtained from C57BL6/N mice (CLEA Japan, Inc., Tokyo, Japan). The injected eggs were transferred into the oviducts of pseudopregnant ICR female mice.
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9

Modulation of Bone Metabolism by Lipid Signaling

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Thirty-six eight-week-old male C57BL/6N mice (CLEA Japan Inc., Tokyo, Japan) were used for the experiment in compliance with ARRIVE Guidelines after obtaining an approval from the animal care committee of Fukuoka Dental College (No. 15022). Mice were once daily intraperitoneally administrated with the following agents for 28 days: CYM-5520 alone, CYM-5520 plus JTE-013 or W146 or Y27632, FTY720 alone, FTY720 plus CYM-5520 or W146, or phosphate-buffered saline (Fujifilm Wako Co.) as a control. After sacrifice, the left tibia was collected and crushed using homogenizer (POLYTRON homogenizer PT3100; Kinematica AG, Malters, Swizerland), an ultrasonic device. Then, RNA was extracted and used for real-time polymerase chain reaction (PCR).
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10

Maternal Low-Protein Diet Effects

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This study was carried out in accordance with the recommendations of Regulations for Animal Experiments and Related Activities at Tohoku University, Center for Laboratory Animal Research, Tohoku University. The protocol was approved by the Center for Laboratory Animal Research, Tohoku University. Virgin female C57BL/6N mice (CLEA Japan, Inc., Tokyo, Japan) about 5 weeks old were maintained under controlled lighting (12-h light cycle) and temperature (24°C). These were divided into two diet groups: Normal (N) and Low Protein (LP) by feeding them AIN-93G and modified AIN-93G (Oriental Yeast Co., Ltd., Tokyo, Japan), respectively. They were allowed free access to food and water ad libitum. The LP diet consisted of only 48% of the protein and 94% of the calorie contents of the N diet as suggested in previous studies (Reeves et al., 1993 (link); Ito et al., 2011a (link),b (link)). After a 2-week acclimatization period, the female mice were time mated and inspected for vaginal plugs the following morning. Plug-positive females were then transferred to single cages and fed ad libitum. Food consumption and body weight were recorded every day. There was a total of 25 pregnant mice per diet group.
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