The largest database of trusted experimental protocols

19 protocols using anti rfp

1

Immunohistochemical Analysis of SOX9 and LOXL2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded tissue sections were labeled with mouse SOX9 antibody (Abcam) or its isotype control (Vector Biolabs) detected with anti-mouse IgG conjugated to Alexa 488. To detect LOXL2 expression, the tissues were subjected to rabbit anti-LOXL2 (GeneTex), anti-RFP (Abcam), anti-phospho-SMAD2/3 (Cell Signaling Technology), anti-COL2A1 (Abcam) or its isotype control antibody and detected with anti-rabbit Alexa 488-conjugated antibody or biotin antibody followed by streptavidin-conjugated Texas red, in respective samples. Anti-fade reagent with DAPI was added to all samples. A Zeiss 710 dual scanner confocal microscope with a Plan-Apochromat objective, oil immersion lens, and a CCD detector was used to obtain confocal images. Image acquisition was performed with Zeiss Zen image analysis software (Carl Zeiss Micro Imaging). The image analysis was performed using Zeiss LSM viewer and Image J software (NIH). Z-stack images analysis and 3-dimensional reconstruction was performed by using LOCI and the 3D viewer plug-in of Image J software. Quantification was performed using Image J software as described [15 (link)].
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Lung and Kidney Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Kidney capsule grafts or lung slides were fixed with 4% paraformaldehyde and embedded in OCT. Samples were sectioned at 6–12 μm sections. The following primary antibodies were used: anti-human CC10 (1/1,000, Santa Cruz, sc-365992), anti-human SPC (1/1,000, Santa Cruz, sc-7705), anti-human AQP5 (1/500, Santa Cruz, sc-9890), anti-human LGR6 (1/1,000, Santa Cruz, SC-48236), anti-human SDF-1 (1/500, Santa Cruz, sc-6193), anti-human CXCR4 (1/500, Santa Cruz, sc-9046), anti-GFP (1/1,000, Abcam, ab-13970), anti-RFP (1/1,000, Abcam, ab-62341), anti-CD73 (1/1,000, Abcam, ab-54217), anti-mouse Vimentin (1/1,000, BD Pharmigen, #550513), anti-human Nuclei antibody (1/1,000, Millipore, MAB1281). Sections were incubated in blocking buffer (PBS, 4% donkey serum, 1% Triton) for 1 h at room temperature. Primary antibodies were incubated overnight at 4 °C. Sections were rinsed three times in PBS and incubated with secondary antibodies diluted at 1:1,000 for 1 h at room temperature. Slides were mounted in Vectashield mounting media with DAPI (4′,6-diamidino-2-phenylindole).
+ Open protocol
+ Expand
3

Multicolor Fluorescence Microscopy Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were deeply anesthetized with tribromoethanol (Avertin) before being perfused transcardially with cold PBS. Brains were fixed overnight in 4% paraformaldehyde/PBS and transferred to 30% sucrose for 2 d. Serial 40-μm coronal sections were then cut on a freezing microtome and serial sections were stained (1:12 series) overnight at 4 °C with anti-GFP (1:1,000; Abcam), anti-RFP (1:1,000; Abcam) or anti-Ki67 (1:1,000; Cell Signaling Technology). Secondary antibodies raised in donkey and conjugated with Alexa Fluor 488 or 647 were used at 4 °C overnight to detect primary labeling (1:500; Jackson ImmunoResearch) and counterstained with 4,6-diamidino-2-phenylindole. Mounted samples were imaged by confocal microscopy (LSM 710; ZEISS); acquired Z stacks through the tumor region were flattened by maximum intensity projection (ImageJ version 1.51g; National Institutes of Health). Tile images were acquired on an upright epifluorescence microscope with motorized stage (Axio Imager M2; ZEISS) and tile scanning software Stereo Investigator, version 2019.1.3 (MBF Bioscience).
+ Open protocol
+ Expand
4

GFP Immunoprecipitation and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
HeLa cells were lysed with lysis buffer (0.5% Triton X-100 in PBS) containing protease inhibitors (Roche) for 15 min on ice, after which the samples were centrifuged at 16,000 × g for 10 min at 4°C. The resulting supernatants were incubated for 16 hr while rotating at 4°C with 8 µg/ml anti-GFP antibody (Roche). Protein A/G PLUS-Agarose (Santa Cruz) was then added to the samples and incubated with rotation for 2 hr at 4°C. Immunoprecipitated fractions were washed two times with lysis buffer and two more times with PBS, and heated to 95°C for 5 min with ×1 Laemmli SDS sample buffer. The samples were subjected to SDS–PAGE and Western blotting with anti-GFP (Santa Cruz) and anti-RFP (Abcam) antibodies.
+ Open protocol
+ Expand
5

Western Blotting Procedure and Antibody Validation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting analyses were carried out as previously reported.29 (link) All antibodies in this study were used as follows: anti-β-tubulin (1:1000, Huaan, Hangzhou, China); anti-JWA (1:500, AbMax, Beijing, China); anti-GAPDH (anti-glyceraldehyde 3-phosphate dehydrogenase), anti-his, and anti-Flag (1:2000, Beyotime, Shanghai, China); anti-MARCH8 and anti-DR4 (1:1000, Proteintech, Chicago, IL, USA); anti-DR4 and anti-Ub (1:500, Santa Cruz, Dallas, TX, USA); anti-PARP-1 and anti-caspase-8, -9, -3 (1:1000, Cell Signaling Technology, Beverly, MA, USA); anti-RFP, anti-TNFR1, anti-Fas and anti-DR5 (1:2000, Abcam, Cambridge, UK). Cycloheximide (Sigma-Aldrich, St Louis, MO, USA) and Lseupeptin (Amresco, Solon, OH, USA) were used at the indicated concentrations.
+ Open protocol
+ Expand
6

Immunofluorescence Analysis of Ovarian Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ovaries from recipient and control mice were fixed with the Tissue-Tek OCT Compound (Sakura Finetek Middle East, Dubai, United Arab Emirates) and sliced in 5 µm thick sections. Slides were washed twice with PBS and kept in blocking solution for 30 min at room temperature. Slides were then incubated with rabbit polyclonal anti-RFP (1∶200; Abcam) or anti-AMH (1∶200, AbD SeroTec) at 4°C overnight. Non-immune immunoglobulins of the same isotype as the primary antibody were used as negative controls. Cells or sections were washed three times with 1×PBS and probed with TRITC–labeled IgG (1∶200, Santa Cruz, CA, U.S.) or FITC-labeled IgG (1∶200, Santa Cruz, CA, U.S.). Fluorescence images were taken using a Leica DMI3000 microscope (Wetzlar, Germany).
+ Open protocol
+ Expand
7

Immunohistochemical Analysis of Mouse Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
The anesthetized mice were perfused with with 4% paraformaldehyde (PFA) dissolved in phosphate buffered saline (PBS), and isolated brains were post-fixed with 4% PFA at 4°C for over night. After washing with PBS, the brains were cryoprotected with 30% sucrose solution, and embedded in Tissue-Tek. The frozen brains were sectioned at a thickness of 35 μm using a Cryostat (CM1900 and CM1850, Leica), and incubated with primary antibodies, including anti-GFP (rabbit polyclonal, Life Technology or rat monoclonal, Nakarai Tesque), anti-RFP (rabbit polyclonal, Abcam), anti-GLAST (goat polyclonal, Frontier Institute), anti-GFAP (mouse monoclonal, SIGMA), anti-ß-gal (rabbit polyclonal, MP Biomedicals), anti-activated caspase3 (rabbit polyclonal, Cell signaling), and anti-S100 (rabbit polyclonal, DAKO). After washing, the sections were incubated with secondary antibodies, including Alexa-Fluor 488, 594 or 633-conjugated anti-rabbit, anti-mouse, anti-rat and anti-goat antibodies (Life technologies). Nuclear staining was performed with Hoechst 33258. Sections were analyzed with either a fluorescent microscope (BX51, OLYMPUS) equipped with a cooled CCD camera system (DP71, OLYMPUS) or a laser confocal microscope (FV1000D, OLYMPUS).
+ Open protocol
+ Expand
8

Immunofluorescence Imaging of Cystinosin-LKG

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stably transfected HK-2 cells expressing RFP-tagged cystinosin-LKG were grown in the 8 wells Chamber Slides (BD Falcon). Cells were fixed in 4% paraformaldehyde for 10 min at 4°C, permeabilized with 0.05% Triton X-100 for 5 min at 4°C, blocked with 1% FBS in PBS for 1 h at room temperature, and stained with primary antibody diluted 1:100 for 1 h at 4°C, followed by two 10 min washes with PBS and incubation with FITC-conjugated anti-mouse IgG antibody for 30 min at 4°C. Lysosomes were stained with anti-LAMP-2 or anti-LAMP-1 mAb (Santa Cruz Biotechnology), endoplasmic reticulum (ER) with anti-PDI mAb (Abcam), Golgi with anti-GM130 mAb (BD Biosciences).
HK-2 transfected with cystinosin-LKG and ΔSSLKG conjugated with RFP or V5His were fixed in 4% paraformaldehyde for 10 min at 4°C, permeabilized 30 min at room temperature with 0.05% saponin, 0.05% BSA, 50 mM NH4Cl, blocked with 1% BSA in PBS for 1 h, and stained with anti-RFP (Abcam) or anti-His Tag, clone HIS.H8 (Millipore) diluted 1:200 for 1 h, incubated with FITC-conjugated anti-rabbit or anti-mouse IgG antibody respectively, in alternated washing steps with PBS.
+ Open protocol
+ Expand
9

Immunoblot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were suspended in the Laemmli buffer and resolved on SDS-PAGE using 4%–20% gradient gels (Bio-Rad, Hercules, CA, USA) at ∼5 mg/lane total protein. For immunoblot, proteins resolved on gels were transferred to nitrocellulose membranes (Bio-Rad) using Transblot (Bio-Rad). After incubating in blocking buffer (5% [w/v] nonfat dry milk, 1×Tris-buffered saline [TBS; 150 mM NaCl, 50 mM Tris–HCl, pH 7.5, 0.1% Tween-20]), membranes were first probed with primary antibodies diluted in 2.5% (w/v) nonfat dry milk, 1× TBS; anti-SYP132 (1:3,000, Agrisera), anti-AHA1 (1:3,000, Eurogentec), anti-RFP (1: 10,000; Abcam, Cambridge, UK), anti-GFP (1:10,000; Abcam), anti-H+-ATPase (1:10,000; Agrisera), anti-PR1 (1:10,000; Agrisera), anti-BIP (1:10,000; Agrisera), anti-HA (1:10,000; Roche, Basel, Switzerland), or anti-VP16 (1:10,000; Abcam). Subsequently, after washing with wash buffer (1× TBS), secondary antibody goat anti-rabbit-horseradish peroxidase conjugate (1:20,000; Abcam) was applied. Proteins were visualized using SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific) and imaged by Fusion Chemiluminescence imager (Vilber, Marne-la-Vallée, France). Total proteins were visualized by staining the membrane with Coomassie or Ponceau. Band density was measured by densitometry using the ImageJ software.
+ Open protocol
+ Expand
10

Immunohistochemical Staining of Cardiac Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The whole heart tissues from each stage were fixed with neutral buffer formalin. Then, they were washed by current water, dehydrated using graded ethanol, vitrified by dimethylbenzene, and deposited in paraffin. All samples were sliced into 5‐μm sections using a paraffin slicing machine (Leica, RM2235). After dewaxing, EDTA antigen retrieval solution (ZSGB‐Bio, Cat#ZLI‐9069) was used for antigen retrieval, and then, blocking solution (ZSGB‐Bio, Cat#ZLI‐9022) was used to block the antigens at room temperature for 1 h. The primary antibody was added at 4 overnight, and the secondary antibody was added at room temperature for 40 min. Anti‐Cardiac Troponin T antibody (cTnT; Abcam, Cat#ab8295) was used to label cardiomyocytes, Anti‐Kir6.1/KCNJ8 antibody (Kcnj8; Abcam, Cat#ab241996) was used to label pericytes, and the Anti‐RFP (Abcam, Cat#ab62341) was used to label tdTomato‐positive cells.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!