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9 protocols using biotin labeled secondary antibody

1

Immunohistochemical Staining of LGR5

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IHC was performed by a standard method as previously described (Bai et al., 2015 (link)). Briefly, 5-μm sections from tissue microarrays were baked at 70 °C for 2 h. The sections were then removed from paraffin in xylene solution, rehydrated using a gradient of ethanol concentrations, boiled in 1 mM Tris-EDTA buffer with a high-pressure cooker for 3 min to retrieve antigens, blocked with 3% hydrogen peroxide for 15 min to inhibit activities of endogenous peroxidases and incubated with 10% goat non-immune serum for 20 min to reduce non-specific staining. Then, the sections were incubated with rabbit anti-LGR5 monoclonal antibody (1:500 dilution; Abcam, Cambridge, UK) at 4 °C overnight, then incubated with biotin-labeled secondary antibody (Invitrogen, Carlsbad, CA, USA) at room temperature for 15 min, followed by incubation with HRP-conjugated streptavidin (Invitrogen) at room temperature for another 15 min. Color development was performed with DAB Substrate Kit (Dako, Glostrup, Denmark). Finally, the sections were counterstained with hematoxylin, dehydrated, cleared, and mounted.
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2

Renal Histology Immunohistochemistry Protocol

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For the renal histology investigation, kidney samples were fixed as instructed. The parts were baked for two hours at 70°C. The antigen was recovered by deparaffinizing the slides in xylene, rehydrating them in an ethanol concentration gradient, and then boiling them for three minutes in 1 mM TE buffer at high pressure. Then, endogenous peroxidase activity was inhibited by blocking the area with 3% hydrogen peroxide for 15 minutes to reduce any residual nonspecific staining. Then, for 20 minutes, we added 10% goat nonimmune serum from Invitrogen in Carlsbad, California. According to the experimental protocol, rabbit polyclonal antibodies against human IL-1β, TNF-α, and IL-6 were used to stain tissue microarrays (dilution, 1 : 400; Santa Cruz Biotechnology, Inc., Dallas, TX, USA; cat. no. Sc-15405). This was done overnight at 4°C, and then the sections were incubated with the biotin-labeled secondary antibody (Invitrogen, Carlsbad, CA). The same sections were treated at room temperature for 15 minutes with HRP-conjugated streptavidin from Invitrogen in Carlsbad, California. Then, using the DAB Substrate Kit, color development was carried out (Dako, Glostrup, Denmark). After being counterstained with hematoxylin, the slices were dried, cleaned, and mounted.
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3

Immunostaining Protocol for Tissue Sections

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Immunostainings were performed as per the standard protocols. Briefly, de-paraffinized in xylene, rehydrated using graded alcohols firstly, 4 µm thick tissue sections, then, were incubated in acitrate buffer at a pH of 6.1 for 15 min to retrieve the antigen. To remove the endogenous peroxidase activity and reduce background non-specific staining, sections were treated with freshly prepared 3% hydrogen peroxide for 10 min and incubated with 10% goat non-immune serum for 20 min. Thenceforth, after incubation with the goat anti-VEGI polyclonal antibody (1:100, cat. no. sc-23185, Santa Cruz Biotechnology, Inc.) or mouse anti-CD31 monoclonal antibody (1:80, 3528, Cell Signaling Technology) at 37˚C for 1 h (h), the sections were incubated with biotin-labeled secondary antibody (Invitrogen) at 37˚C for 20 min, and then incubated with HRP-conjugated streptavidin (Invitrogen) at 37˚C for 30 min. The color development was performed with a DAB Substrate kit (Dako). At last, the sections were counterstained with dehydrated, cleared and mounted hematoxylin. Appropriate negative controls were carried out by excluding the primary antibody and/or replacing it with an irrelevant anti-serum (no data shown).
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4

Immunohistochemical Analysis of Inflammatory Cytokines

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The kidney tissues were fixed in 10% neutral buffered formalin, embedded in paraffin, and sectioned at 4 μm thickness. The sections were baked at 70°C for 2 h. Thereafter, the sections were deparaffinized in xylene, rehydrated using a gradient of ethanol concentrations, and boiled in 1 mM·TE buffer in a high-pressure cooker for 3 min to retrieve the antigen. They were blocked with 3% hydrogen peroxide for 15 min to inhibit the endogenous peroxidase activity and then incubated with 10% goat nonimmune serum (Invitrogen, Carlsbad, CA) for 20 min to reduce the nonspecific background staining. After that, TMA sections were incubated with rabbit antihuman primary polyclonal antibodies against IL-1β, TNF-α, and IL-6 (Cell Signaling Technology, CST) overnight at 4°C and then incubated with a biotin-labeled secondary antibody (Invitrogen, Carlsbad, CA) at room temperature for 15 min, followed by incubation with HRP-conjugated streptavidin (Invitrogen, Carlsbad, CA) at room temperature for 15 min. Then, the color development was performed with a DAB Substrate Kit (Dako, Glostrup, Denmark). Finally, the sections were counterstained with hematoxylin, dehydrated, cleared, and mounted.
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5

Immunohistochemical Analysis of Ki-67 in Tumor Tissue

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Immunohistochemical staining was performed on 4 μm tumor tissue sections. The section was deparaffinized, rehydrated, and autoclaved in a 0.01 M citrate buffer solution (pH 6.0). Section was later incubated overnight with anti-Ki-67 antibody (1:500; Cell Signaling Technology), followed by incubation with biotin-labeled secondary antibody (1:5000; Thermo Scientific, Waltham, USA) at room temperature for 20 min. The section was detected using 3,3′-diaminobenzidine tetrahydrochloride, counterstained with hematoxylin, and visualized under a light microscope (Olympus, Tokyo, Japan).
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6

Immunohistochemical Staining of Tissue Microarray

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TMA sections were then used for the immunohistochemical staining as described previously.24 (link) Briefly, TMA sections were deparaffinized with xylene and then dehydrated through descending grades of ethanol to deionized water according to standard procedures. After antigen retrieval with the appropriate buffer (0.01 M citrate buffer, pH 6.0, high to boiling) for 3 minutes, the sections were cooled at room temperature. Endogenous peroxidase was blocked with 3% (v/v) aqueous hydrogen peroxide for 10 minutes, followed by incubation with normal serum for 20 minutes to reduce nonspecific binding. Then, the sections were incubated with a primary antibody against SP (1:100, SC9758; Santa Cruz Biotechnology Inc., Dallas, TX, USA) or an antibody against NK1R (1:250, SC14116; Santa Cruz Biotechnology Inc) overnight at 4°C. Negative controls were included, and steps were carried out with PBS. Subsequently, TMA sections were incubated with biotin-labeled secondary antibody (Thermo Fisher Scientific, Waltham, MA, USA) for 20 minutes at room temperature, followed by incubation with streptavidin-biotinylated horseradish peroxidase-conjugated antibody (Thermo Fisher Scientific) for another 20 minutes. Finally, the sections were stained with 3,3-diaminobenzidine and lightly counterstained with Mayer’s hematoxylin, dehydrated, and mounted with resinous mounting medium.
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7

Immunohistochemical Analysis of Apoptosis Markers

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Five- µm sections were cut, de-waxed with xylene and rehydrated with graded alcohol. The slides were then placed in a 0.01 M citrate buffer solution (pH = 6.0) and pre-treatment procedures to unmask the antigens was performed in a microwave oven for 10 minutes. Sections were treated with peroxidase and protein block for 60 min each and then incubated overnight with anti- GAL-1 (rabbit anti-mouse polyclonal antibody 1∶2500, Davids Biotechnologie GmbH, Germany), anti- HIF 1 α (rabbit anti-mouse polyclonal antibody 1∶300, Davids Biotechnologie GmbH, Germany), anti-cleaved caspase 3(Rabbit polyclonal, ASP 175, Cell Signaling Technology, USA), anti-Bcl2 (Mouse monoclonal,SP66,Cell Marque, USA )and anti-ki67 (Rabbit monoclonal, SP6, Cell Marque, USA) antibodies at 4°C. After conjugation with primary antibodies, sections were incubated with biotin-labeled secondary antibody (Thermo Scientific, USA) for 20 minutes at room temperature. Finally, sections were incubated with streptavidin–peroxidase complex for 20 minutes at room temperature (Thermo Scientific, USA), DAB chromogen (Thermo Scientific, USA) added and counter staining done with haematoxylin. Appropriate positive controls were used. For negative control, the primary antibody was not added to sections and the whole procedure carried out in the same manner as mentioned above.
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8

Embryo Immunostaining and Visualization

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Embryo fixation and immunostaining were performed as described (Reuter and Scott, 1990 (link)). The primary antibodies used include rabbit α-SAS (D. Cavener, 1:500), guinea pig α-Sage (1:100), rabbit α-Forkhead (S. Beckendorf,1: 500)1: rat α-CrebA (1:1000), rat α-Pasilla (1:5000), rabbit α-Phospho histone H3 (Abcam, 1:500), rabbit α-CC3 (Cell Signaling, 1:100), α-PKC ζ (C-20, Santa Cruz Biotech,1:500), rat α-DE-Cadherin (DCAD2, DSHB,1:10), mouse α-Coracle (C566.9, DSHB, 1:200), mouse α-alpha-spectrin (3A9, DSHB, 1:1), rabbit α-Laminin (J. Fessler, 1:1000), mouse α-DCSP-2 (6D6, DSHB, 1:200), mouse α-Lamin (ADL84.12, DSHB, 1:200), mouse α-beta-gal (Promega,1:1000) and rabbit α-GFP (Molecular probes, 1:1000). For HRP staining, Biotin-labeled secondary antibodies were used at 1:500 dilution (Molecular Probes). The HRP staining signal was amplified using the Vectastain ABC kit (Vector Labs). For fluorescence staining, Alexa-488- or Alexa-568- or Alexa-647- labeled secondary antibodies were used at a 1:500 dilution (Molecular Probes). Confocal images were obtained using the LSM 700 confocal microscope (Carl Zeiss, Inc.). Whole-mount in situ hybridization was performed as described previously (Lehmann and Tautz, 1994 (link)). Images from in situ hybridized and HRP stained embryos were obtained with an Axiophot microscope (Carl Zeiss, Inc.).
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9

Immunohistochemical Analysis of TGF-β1 and Sox9

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For immunohistochemistry (IHC), 8 μm sections of formalin-fixed and paraffin-embedded brain tissues were first de-waxed and rehydrated before antigen retrieval. The TGF-β1-antibody (1:100 dilution; Proteintech, China) and Sox9-antibody (1:250 dilution; Abcam, ab76997) were used for this study. After incubation with the primary antibodies, the tissues were rinsed and incubated for 1 h with Biotin-labeled secondary antibodies at room temperature (Molecular Probes 1:800). Nuclei were stained by Hematoxylin. Stained sections were examined under a light microscope and the positive cells in five high power fields (1 × 400) were counted for statistic study. The relative expression of TGF-β1 and Sox9 was analyzed by Graphpad via Spearman rank correlation test.
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