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3 protocols using gl7 pe

1

Multiparameter Analysis of Immune Cell Subsets

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Single-cell suspensions from spleens, bone marrow, or peripheral lymph nodes were blocked for 30 min using FBS. Cell-surface staining was achieved by incubating cells at 4°C for 30 min with fluorescence-conjugated anti–mouse antibodies (clone; source): XBP1s–Alexa Fluor 647 (Q3-695; BD), XBP1s-phycoerythrin (PE; Q3-695; BD), B220–Alexa Fluor 488 (RA3-6B2; BioLegend), B220-BV605 (RA3-6B2; BioLegend), CD43-PE (eBioR2/60; eBioscience), CD19–Alexa Fluor 647 (6D5; BioLegend), IgM-PE-Cy7 (RMM-1; BioLegend), IgD-FITC (11-26c.2a; BioLegend), GL7-PE (GL7; BioLegend), AA4.1-PE-Cy7 (AA4.1; BioLegend), CD1d-PerCP-Cy5.5 (1B1; BioLegend), CD23-FITC (B3B4; BioLegend), CD3-APC-Cy7 (145-2C11; BioLegend), CD4-BV605 (RM4-5; BioLegend), CD8α-PE-Cy7 (53–6.7; BioLegend), and CD138-PE (281–2; BioLegend). Viability staining was accomplished using DAPI exclusion during acquisition. Acquisition of B, T, and dendritic cell populations was performed on an LSRII cytometer (BD) harboring a custom configuration for the Wistar Institute. Cytometry data were analyzed using FlowJo software (7.6.1; Tree Star Inc.).
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Detailed Flow Cytometry for B Cell Subsets

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Cells were resuspended at 106 per 100μl of FACS buffer (1X PBS, 1%BSA, and 2mM EDTA) and blocked with anti-Fc (anti-CD16/CD32) (Tonbo Biosciences, 2.4G2). The following antibodies were used to for staining: B220-PE-Cy7 (Tonbo Biosciences RA3-6B2), CD138-BV711 (BD, 281–2), GL7 eFluor660 (eBioscience, GL-7), CD11b-FITC (Tonbo Biosciences, M1/70), and Ghost Dye Red 780 (Tonbo Biosciences 13–0865) to asses viability. The Annexin V FITC Apoptosis Detection Kit (eBioscience BMS500FI-100) was used to assess cell death. Cells were stained for 40 min and fixed using 1% paraformaldehyde.
Enrichment of CD138+ PB was performed by staining with CD138-APC (BD, 281–2), followed by magnetic enrichment using anti-APC MicroBeads (Miltenyi # 130-090-855). For RNA-seq, GL7+ cells were further enriched from the CD138-depleted fractions using GL7-PE (Biolegend #144608) and anti-PE MicroBeads (Miltenyi #130-105-639).
Flow cytometry was performed on a BD LSRII using FACSDiva (v6.2) and analyzed using FlowJo software. The following gating strategy preceded all flow cytometry analyses presented. Cells were gated on 1) lymphocytes (forward light scatter [FSC]–area by side scatter [SSC]–area), 2) singlets (FSC-height by FSC- width), 3) singlets (SSC- height by SSC-width), 4) live cells (Viability Dye negative), with 5) the exclusion of contaminating macrophages bearing CD11b (Supplemental Figure2A).
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3

Multicolor Flow Cytometry Antibody Panel

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Commercial antibodies and staining reagents, from BioLegend: GL7-PacBlue, GL7-PE, GL7-A647, B220-PerCP-Cy5.5, B220-APC-Cy7, IgMb-FITC, IgMa-PE, CD45.2-FITC, CD45.2-APC, CD45.1-FITC, CD45.1-PE, IgD-PB, CD21/35 (7E9)-PE, CD138-PE, CD38-PE-Cy7, CD31-A647, CD157-PE, Streptavidin-PE/Cy7; from eBioscience: CD95 (APO-1/Fas)-PE (clone 15A7) and viability dye Fixable live/dead stain Efluor780; from ThermoFisher Scientific: Rabbit-anti-Goat-A488, Hoechst 33342, DAPI (4',6-Diamidino-2-Phenylindole, Dihydrochloride), Phalloidin-A568; from Southern Biotech: AP-Goat-anti-Mouse IgG, AP-Goat-anti-Mouse IgG2a, AP-Goat-anti-Mouse IgG2c; from Rockland Immunochemicals: Rabbit polyclonal anti-B-Phycoerythrin; from DAKO: Rabbit polyconal anti-Mouse Immunoglobulins-biotin; from Perkin-Elmer: Europium-labeled streptavidin. In-house generated anti-idiotypic Ab, clone 9D11, conjugated to Alexa Fluor 647 or Alexa Fluor 568; in-house generated Rabbit polyclonal anti-C3b conjugated to Alexa Fluor 633.
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