The largest database of trusted experimental protocols

4 protocols using ab61193

1

RIP Assay for AUF1 and Bcl-2 Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIP was performed using the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, Cambridge, MA). For RIP assay, the supernatant was incubated overnight with beads conjugated with anti-AUF1 (Abcam, ab61193, 1: 50) or anti-Bcl-2 antibody (Abcam, ab32124, 1: 50) or negative control mouse IgG (Millipore). The beads were then rinsed with cold NT2 buffer and cultured with proteinase K at 10 mg/ml (Sigma-Aldrich, USA).
+ Open protocol
+ Expand
2

Quantification of EMT-related Protein Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins were prepared, and their concentrations were determined using a Total Protein Extraction Kit (Solarbio, Beijing, China). Cell lysates were separated by 10% SDS-PAGE and transferred onto nitrocellulose membranes (GE Healthcare, USA). Then, the membranes were blocked with 5% non-fat milk in TBST buffer. The following primary antibodies were used in the study: anti-AUF1 (1:1000, Abcam, ab61193), anti-FOXO3 (1:1000, Abcam, ab17026), anti-E-cadherin (1:1000, Abcam, ab1416), anti-Collagen 1 (1:1000, Abcam, ab6308), anti-α-SMA (1:1000, Abcam, ab5694), and anti-β-actin (1:1000, Abcam, ab8226). Next, the membranes were incubated with HRP-conjugated secondary goat anti-mouse (1:5000, Proteintech, Rosemont, IL, SA00001-1) or goat anti-rabbit (1:5000, Proteintech, SA00001-2) antibodies for 2 h at room temperature. The relative grey values of immunoreactive bands were calculated relative to those of β-actin levels.
+ Open protocol
+ Expand
3

Electrophoretic Mobility Shift Assay of Caco-2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
EMSA was performed using a LightShift Chemiluminescent EMSA kit (Pierce, Rockford, IL, USA) with nuclear extracts from Caco-2 cells. The mutant and wild-type 29-bp DNA probes (Supplementary Table 3) were synthesized by Integrated DNA Technologies (Coralville, IA, USA). Biotin-labeled DNA was visualized by chemiluminescence. In the supershift assay, for depletion, the following antibodies (1 µl) were added along with the nuclear extract in a 10-µl reaction system: HnRNP K (ab70492, Abcam), hnRNP A/B (sc98810, Santa Cruz), hnRNP Q (ab10687, Abcam), HnRNP D (ab61193, Abcam), and control IgG (ab46540, Abcam).
+ Open protocol
+ Expand
4

RNA-Binding Protein Immunoprecipitation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The RNA immunoprecipitation assay was performed as previously described [16 (link)]. Total RNAs were immunoprecipitated and extracted using an AUF1 antibody (ab61193, Abcam), CPEB1 antibody (ab73287, Abcam), HuD antibody (sc‐28299, Santa Cruz Biotechnology) and normal rabbit IgG (#2729, Cell Signaling Technology, Danvers, MA, USA). cDNA was synthesized from the precipitated RNAs by employing PrimeScript RT Reagent Kit with gDNA Eraser (TaKaRa). qPCR was performed using THUNDERBIRD SYBR qPCR Mix (TOYOBO) and Rotor‐Gene Q Real‐time PCR System (Qiagen).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!