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4 protocols using dnaase 1

1

Tumor Cell Cycle Analysis by Flow Cytometry

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Portion of freshly excised tumors were minced and dissociated with an enzyme cocktail consisting of 0.04% collagenase (Gibco) and 0.05%DNAase I (Worthington Biochemical) followed by digestion with 0.25%trypsin/EDTA (Gibco). The suspension was then filtered through 40µm cell strainer to obtain single cell suspension. Flow-cytometric analysis of DNA content and Ki-67 was performed based on simultaneous analysis of Ki-67 and propidium-iodide (27 (link)). The percentage of cells in G0 and S-phase were calculated and correlated to changes in [18F]ISO-1 and [18F]FLT PET/CT, respectively.
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2

Primary Mouse Astrocyte Culture Protocol

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Primary cultures of astrocytes were prepared from P1–P4 mouse brains. Cerebral cortices were dissected and dissociated in 15 mL tubes at 2 mg/mL papain (Worthington) in sterile Hybernate-A (Gibco) under agitation at 37 °C for 15 min. The papain was then inactivated with a mixture of ovomucoid solution and DNAase I (both Worthington). The cell suspension was then washed twice using pre-warmed Neurobasal media and centrifugation at 17×g for 5 min. The cell suspension was then strained through a 100 μm cell strainer (CellTreat), resuspended in Neurobasal medium supplemented with 10% (v/v) FBS and 10 U/mL penicillin and streptomycin (Gibco). Cells were then plated onto T-75 flasks (Falcon) pre-coated with poly-D-lysine at 5 μg/mL (Sigma) at around 10,000 cells per cm2. Cells were maintained in T-75 flasks at 37 °C in a humidified 5% CO2 chamber for 2 weeks before frozen down as stock for future cell culture experiments.
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3

Clonogenic Assay of Murine Pituitary Tumors

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Clonogenic assays were performed on murine tumoural pituitaries as described (Gaston-Massuet et al. 2011 (link), Carreno et al. 2017 (link), Haston et al. 2017 (link)). Pituitaries were dissected using aseptic forceps and the posterior pituitary was removed. After mincing with forceps, the remaining tissue was placed into 200 µL of enzyme mix, which consisted of Hanks’ Balanced Salt Solution (HBSS, Gibco), 0.5% w/v Collagenase (Worthington), 50 µg/mL DNAase I (Worthington), 1% Fungizone and 0.1× trypsin (Sigma), for 4 h in a 37°C water bath. HBSS was added to make a final volume of 500 µL post incubation and the solution was triturated into a single-cell suspension. Once single-cell suspensions were achieved, 9.5 mL of HBSS was added and the cells spun down for 5 min at 200 g. Cells were re-suspended in growth medium, which consisted of DMEM/F12, 5% FCS, 1% PenStrep, 20 ng/mL human recombinant bFGF (R&D Systems) and 50 ng/mL cholera toxin. Cells were plated at clonal density in a six-well plate at 2000, 4000 and 8000 cells per well. Fresh bFGF was added after 2 days, and medium was then changed on the third day and every 3 days after colony establishment. Colony counting was conducted after 7 days in culture. Colonies were washed with PBS and fixed for 20 min with 4% PFA, washed again in PBS and stained with Harris haematoxylin for 15 min at room temperature.
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4

Dissociation and Culture of Rodent Dorsal Root Ganglia

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Female rat and mouse dorsal root ganglia (DRG) were purchased from BrainBits LLC (Springfield, IL) and dissociated the day after tissue collection. Mouse or rat DRG were sequentially digested in 0.12% papain for 45 minutes (BrainBits) and 0.3% collagenase Type II (Worthington Biochemical, Lakewood, NJ) for 15 minutes at 37°C in Hibernate A medium without Ca 2+ or Mg 2+ (BrainBits), followed by trituration with 0.05% DNAase I (Worthington) in Hibernate A medium. Cells were pelleted by centrifugation at 180g for 5 minutes and washed twice with NbActiv4 (BrainBits). Dissociated neurons were plated on glass coverslips (Neuvitro, Camas, WA) coated with rat tail collagen (Cell Applications Inc, San Diego, CA) in NbActiv4 with 25 ng/mL rat NGF (Thermo-Fisher). Neurons were kept at 37°C in 5% CO 2 and used for patchclamp recordings the next day.
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