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Rneasy plus mini kit 250

Manufactured by Qiagen
Sourced in United States

The RNeasy Plus Mini Kit 250 is a versatile tool for the isolation and purification of total RNA from a variety of sample types. It utilizes a simple and efficient spin-column-based method to provide high-quality RNA for downstream applications such as RT-PCR, Northern blotting, and microarray analysis.

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5 protocols using rneasy plus mini kit 250

1

Optimizing RNA Extraction from Cell Lines

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For RNA extraction, 2 × 106 cells (HBEpC, HLB, and A549) in star T75 flask at Day 3 were used. Culture conditions were compared between aerobic high glucose and hypoxia low glucose with and without lactate (0, 12.5 μM, 125 μM, and 1.25 mM). After trypsin treatment, cells were washed with PBS two times (phosphate buffered saline). Total RNA was extracted from cells using RNeasy plus mini kit 250 (QIAGEN, 74136) according to the manufacturer’s protocol.
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2

Illumina Sequencing Protocol for Transcriptome Analysis

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Total RNA extraction was performed using RNeasy plus mini kit (250) (Qiagen 74136), and mRNA isolation was accomplished using magnetic mRNA isolation kit (oligo(dT) beads; NEB E7490). The sequencing libraries were prepared using NEBNext ultra DNA library prep kit (NEB E7645S) and were sequenced on an Illumina NovaSeq 6000 using 150-bp paired-end reads. Adapter/quality trimming was performed with Trim Galore! v0.6.10 (Babraham Bioinformatics; https://github.com/FelixKrueger/TrimGalore). Quantification of transcript expressions was performed with Salmon v1.10.2 (Patro et al. 2017 (link)), and aggregation to the gene level was performed with the R package tximport v1.22.0 (Soneson et al. 2015 (link)).
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3

Testicular RNA Extraction and Quantification

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Testicles stored at – 80 ºC from the control and treatment group were used for RNA extraction. Testis samples were lysed and homogenized using TissueLyser (Qiagen). Approximately 30 mg of testis tissue was used (6 biological replicates) for RNA extraction using RNeasy Plus Mini Kit 250 (Qiagen, 74134). Purified RNA was eluted in 50 µL of RNase-free water. RT was performed using 1 µg of total RNA with iScript (Bio-Rad, 1708891) adhering to the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines Bustin et al. (2009). We used Rpl37a as a housekeeping gene because it showed no variation between replicates based on RNA-seq data. Results are presented as the fold change relative to the control ± SD. Primers for this study were selected using the Primer-Blast program from ncbi.nih.gov, and most of them included exon-to-exon junctions; the primers are listed in Additional file 3:Table S2A. A nonparametric Mann-Whitney test was used for evaluating statistical significance.
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4

qRT-PCR Analysis of Monocyte mRNA

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RNA was extracted from FACS-sorted monocytes using a RNeasy Plus Mini Kit (250) (Qiagen, Chatsworth, CA, USA) and reverse-transcribed using QuantiTect Reverse Transcription Kit (Qiagen). PCR was performed on a Chromo4 real-time PCR system (Bio-Rad, Hercules, CA, USA) with GoTaq Green Master Mix (Promega, Woods Hollow, WI, USA), as described previously [10 (link)–12 (link)]. The mRNA expression of each gene was normalized to the expression of the reference gene β-actin. The specificity of PCR amplification was confirmed by melting curve analysis and agarose gel electrophoresis.
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5

Quantification of DENV-2 RNA in Mosquitoes

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Mosquitoes treated as described above were collected, and DENV-2 RNA copies in each mosquito were detected by real-time RT-PCR at the same time, and the cycle threshold (CT) value of each mosquito was recorded. At least 60 mosquitoes were analyzed for each group.
After being frozen to death at −20°C, each mosquito was collected in a grinding tube with 350 μl lysis buffer and then was fully grinded by tissue grinded instrument. The DENV-2 RNA was isolated with RNeasy plus Mini Kit (250) (Qiagen, German), and quantitatively tested with the dengue virus 2 real-time fluorescent RT-PCR kit (Shanghai ZJ Bio-Tech, China). The Master Mix volume for each reaction was pipetted as follows: super mix 18 μl, enzyme mix 1 μl, internal control 1 μl, extraction RNA 5 μl. PCR reaction conditions were: one cycle of 45°C for 10 minutes and 95°C for 15 minutes, then 40 cycles of 95°C for 15 seconds and 60°C for 60 seconds, fluorescence measured at 60°C. During the bioassay, the standard curve between CT values and DENV-2 RNA concentrations (copies/ml) was also detected as described previously [47 (link)].
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