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3 protocols using anti cd3 alexafluor700 ucht1

1

Phenotyping of MAIT Cells from BAL and PBMCs

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When sufficient cells were available, freshly isolated matched BAL lymphocytes and PBMCs were simultaneously stimulated using PMA (25 ng/mL) and ionomycin (500 ng/mL) for 6 hours at 37°C in 96-well microplates. After 6 hours, plates were washed in phosphate buffered saline (PBS) before cells were stained with 1:500 of either MR1 6-FP (PE) or MR1 5-OP-RU (PE) tetramer (NIH Tetramer Core Facility). Tetramer staining was performed in the dark at room temperature for 40 minutes, followed by surface staining at 4°C for 20 minutes. The surface staining antibody master-mix included: 1:25 of anti-CD4 BV711 (OKT4, BioLegend), 1:100 of anti-CD8 APC-H7 (SK1, BD Biosciences), 1:50 of anti-CD26 FITC (BA5b, BioLegend), 1:50 of anti-CD161 PE-Cy7 (HP-3G10, BioLegend) and 1:800 of a fixable viability dye (Live/Dead Aqua, Invitrogen). Cells were then fixed (Fix & Perm Medium A, Invitrogen) at room temperature in the dark for 15 minutes and permeabilized (Fix & Perm Medium B, Invitrogen) for 20 minutes at 4°C. Intracellular antibodies were added during permeabilization and included 1:50 each of: anti-CD3 AlexaFluor700 (UCHT1, BioLegend), anti-IFN-γ PE-Dazzle594 (4S.B3, BioLegend), anti-granzyme B AlexaFluor647 (GB11, Biolegend), and anti-IL-17 BV421 (BL168, BioLegend). Cells were PBS washed, acquired using the LSRFortessa™ (BD Biosciences) and the data then analyzed using FlowJo (v10.4).
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2

Thawing and Staining of Cryopreserved PBMCs

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Human PBMCs were obtained from patients undergoing routine care following Dartmouth Institutional Review Board approved protocols. Cryopreserved PBMCs were thawed and rested for 2 hours in RPMI containing 10% FBS, 1% L-glutamine, 1% HEPES, 1% non-essential amino acids, 1% sodium pyruvate, 0.01% DNAse and β-mercaptoethanol at 37°C. Cells were then washed with 1x PBS and stained with LIVE/DEAD Fixable Blue (ThermoFisher) for 30 minutes on ice. After splitting the sample into three, cells were centrifuged at 400 × g for 5 minutes at 4°C. The supernatant was discarded, and the cell pellet was stained with different batches of tetramer at 1:100 on ice for 30 minutes. Next, cells were centrifuged to remove supernatant and incubated for 30 minutes on ice in 50 μL FACS buffer (1x PBS with 0.2% BSA and 10% sodium azide) containing anti-CD4 PE-Cy5 (RPA-T4, BioLegend), anti-CD8 APC-Fire750 (SK1, BioLegend), and anti-CD3 Alexa Fluor 700 (UCHT1, BioLegend). After incubation, cells were washed twice with 3 mL FACS buffer and fixed in 2% PFA before flow cytometry.
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3

Multiparameter Analysis of T Cell Responses

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When sufficient cells were available, freshly isolated matched BAL lymphocytes and PBMCs were simultaneously stimulated using PMA (25 ng/mL) and ionomycin (500 ng/mL) for 6 hours at 37°C in 96-well microplates. After 6 hours, plates were washed in phosphate buffered saline (PBS) before cells were stained with 1:500 of either MR1 6-FP (PE) or MR1 5-OP-RU (PE) tetramer (NIH Tetramer Core Facility). Tetramer staining was performed in the dark at room temperature for 40 minutes, followed by surface staining at 4°C for 20 minutes. The surface staining antibody master-mix included: 1:25 of anti-CD4 BV711 (OKT4, BioLegend), 1:100 of anti-CD8 APC-H7 (SK1, BD Biosciences), 1:50 of anti-CD26 FITC (BA5b, BioLegend), 1:50 of anti-CD161 PE-Cy7 (HP-3G10, BioLegend) and 1:800 of a fixable viability dye (Live/Dead Aqua, Invitrogen). Cells were then fixed (Fix & Perm Medium A, Invitrogen) at room temperature in the dark for 15 minutes and permeabilised (Fix & Perm Medium B, Invitrogen) for 20 minutes at 4°C. Intracellular antibodies were added during permeabilization and included 1:50 each of: anti-CD3 AlexaFluor700 (UCHT1, BioLegend), anti-IFN-γ PE-Dazzle594 (4S.B3, BioLegend), anti-granzyme B AlexaFluor647 (GB11, Biolegend) and anti-IL-17 BV421 (BL168, BioLegend). Cells were PBS washed, acquired using the LSRFortessa™ (BD Biosciences) and the data then analysed using FlowJo (v10.4).
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