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5 protocols using pan caspase inhibitor z vad fmk

1

Caspase Inhibition and NF-κB Signaling

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Unless otherwise noted, chemicals were from Sigma (St. Louis, MO, USA). Antibody of α-actin was from Cell Signaling Technology, Inc. (Danvers, MA, USA). The antibody and siRNA of caspase 5 were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Pan-caspase inhibitor Z-VAD-FMK and caspase-1 inhibitor Z-YVAD-FMK were from R&D Systems (Minneapolis, MN, USA), and caspase 4/5 inhibitor Z-LEVD-FMK was from Biovision, Inc. (Milpitas, CA, USA). THP1 Blue NF-κB reporter monocyte and QUANTI-Blue were from InvivoGen (San Diego, CA, USA). TRIzol reagent, Mammalian Protein Extraction Reagent (M-PER), Reverse Transcription kit, SYBR Green PCR master mixture, RNAiMAX, OPTI-MEM, and RPMI 1640 medium were from Thermal Fisher Scientific Inc. (Thermal Fisher, Rockford, IL, USA).
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2

Synthesis and Characterization of Molecule14d

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DDP37368 (molecule14d) and its enantiomers DDP38003 (molecule15) has been synthesized as previously described68 (link). Details of other chemicals used in this study are Caspase-8 Inhibitor Z-IETD-FMK (R&D System, cat#FMK007), Caspase-3 Inhibitor Z-DEVD-FMK (R&D System, cat#FMK004), Pan Caspase Inhibitor Z-VAD-FMK (R&D System, cat#FMK001), m-TOR inhibitor rapamycin (LC Laboratories, R-5000 Rapamycin), IGF-1R/IR inhibitor OSI-906 (cat# S1091, Selleckchem.com), PI3K inhibitor Ly294002 (cat#9901, Cell Signaling Technology), ERK inhibitor Trametinib (GSK-1120212, cat#A-1258, Active Biochem), cycloheximide (Sigma, cat#C7698), actinomycin D((CAS 50-76-0); Santa Cruz Biotechnology, Inc., cat# sc200906) and TRAIL (ALX-201-073-C02, 3v Chimica Srl).
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3

Cytokine-Induced Cell Activation Assay

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IL-15 at (Peprotech #200-15), IL-12 (Peprotech #200-12), IL-18 (Invivogen #rcyec-hil18), IL-1α (Peprotech #200-200-01A), IL-1β ((Peprotech #200-01B), IL-33 (Peprotech #200-33), IL-36 (Peprotech #200-36), Pan-Caspase Inhibitor Z VAD FMK (R&D Systems #FMK001), Brefeldin A Solution (1000X) (BioLegend #420601), Granzyme B Inhibitor II, Calbiochem (EMD Millipore #368055-1MG), Cell Activation Cocktail (BioLegend #423302) were used.
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4

Exploring Apoptosis Pathways in Cells

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Synthetic N-hexanoyl-DL-homoserine lactone (C6-HSL), N-decanoyl-DL-homoserine lactone (C10-HSL), N-(3-hydroxy dodecanoyl)-DL-homoserine lactone (OH-dDHL), tunicamycin, thapsigargin, hydrogen peroxide 30% (wt/vol) (H2O2), N-Acetyl-l-cysteine (NAC), and staurosporine were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies with anti-caspase-3, anti-caspase-8, anti-cytochrome c, anti-PARP, anti-β-actin, anti-caspase-9, anti-VDAC, anti-CHOP, anti- caspase-12, anti-p-eIF2α, anti-IRE1α, and anti-BIP were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-p-IRE1α was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Anti-ATF 6α, anti-COX-2, and methyl-β-cyclodextrin (MβCD) were purchased from Santa Cruz Biotechnology (Paso Robles, CA, USA). Horseradish peroxidase-conjugated goat anti-rabbit IgG and goat anti-mouse IgG were purchased from Abcam (Cambridge, MA, USA). The pan-caspase inhibitor (Z-VAD-FMK), caspase-3 inhibitor (Z-DEVE-FMK), and caspase-9 inhibitor (Z-LEHD-FMK) were purchased from R&D Systems (Minneapolis, MN, USA). The paraoxonase 2 (PON2) inhibitor ((1,2,4)trizolo(4,3–a)quinolones; TQ416) was purchased from Maybridge (Cornwall, UK).
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5

Apoptosis Pathway Evaluation Protocol

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Pan Caspase Inhibitor Z-VAD-FMK was purchased from R&D Systems (Minneapolis, MN, USA). eBioscience™ Annexin V Apoptosis Detection Kit FITC came from Invitrogen™ (Carlsbad, CA, USA). N-Acetyl-L-cysteine, propidium iodide, etoposide and the fluorescent cationic lipophilic dye 3,3′-dihexyloxacarbocyanine iodide (DiOC 6 ) were purchased from Sigma-Aldrich (St Louis, MO, USA). Mouse monoclonal antibodies (mAb) against human caspase-9 (catalog# 551247), caspase-3 (#610323), caspase-8 (#551243) were from BD Pharmingen (Franklin Lakes, NJ, USA); anti-Bcl-2 (sc-7382) and Bcl-xL (sc-8392) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA); anti-human β-actin mAb (#02844826) and polyclonal anti-Mouse IgG (H+L)-Peroxidase-labeled antibody (SAB3701095-2) were purchased from Sigma-Aldrich.
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