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3 protocols using pierce mitochondria isolation kit

1

Antibody-based Protein Quantification in Cellular Studies

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Antibodies for β-actin (sc-47778), COX2 (sc-19999), MMP1 (sc-21731), NRF1 (sc-101102), and SOD2 (sc-30080) were obtained from Santa Cruz Biotechnology. Antibodies for acetyl-histone H4 K5, K8, K12, and K16 (H4K5,8,12,16ac, #PA5-40084) were obtained from Invitrogen. Antibodies for anti-histone H3 acetyl K9, K14, K18, K23, K27 (H3K9, 14, 18, 23, 27ac, ab47915), ERα (ab3575), ERβ (ab3576), H4K20me1 (ab9051), H4K20me3 (ab9053), H4R3me1 (ab17339), H3K9me2 (ab1220), H3K9me3 (ab8898), H3K27me2 (ab24684) and H3K27me3 (ab6002), H2AX (ab20669), and γH2AX (ab2893) were obtained from Abcam. The antibody for 8-oxo-dG (4354-MC-050) was obtained from Novus Biologicals. The 3-nitrotyrosine (3-NT) was measured using 3-Nitrotyrosine ELISA Kit (ab116691 from Abcam) per manufacturers’ instructions. The mitochondrial fraction was isolated using a Pierce Mitochondria Isolation Kit (Pierce Biotechnology) according to manufacturers’ instructions. The protein concentration was measured using the Coomassie Protein Assay Kit (Pierce Biotechnology) per manufacturers’ instructions. Luciferase activity assay was carried out using the Dual-Luciferase™ Assay System (Promega) and the transfection efficiency was normalized using a cotransfected renilla plasmid (23 (link)). 17β-estradiol (E2, #E2758) and TNFα (#T0157) were obtained from Sigma.
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2

Quantifying Protein Modifications in Cells

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The antibodies for ERRα (ab37438), H2AX (ab20669) and γH2AX (ab2893), H3K9me2 (ab1220), and H3K9me3 (ab8898) and H3K27me3 (ab6002) were obtained from Abcam. Antibodies for β-actin (sc-47,778), ERβ (sc-137,381), and SOD2 (sc-30,080) were obtained from Santa Cruz Biotechnology. LNG and EE were obtained from Sigma. 3-Nitrotyrosine (3-NT) was measured using the 3-Nitrotyrosine ELISA Kit (ab116691 from Abcam) per manufacturers’ instructions. The mitochondrial fraction was isolated using a Pierce Mitochondria Isolation Kit (Pierce Biotechnology) per manufacturers’ instructions. Nuclear extracts were prepared using the NE-PER Nuclear and Cytoplasmic Extraction Reagents Kit (Pierce Biotechnology). Protein concentration was measured using the Coomassie Protein Assay Kit (Pierce Biotechnology).
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3

Mitochondrial and Nuclear Protein Extraction

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The antibodies for ERRα (ab37438), H2AX (ab20669), γH2AX (ab2893), H3K9me2 (ab1220), H3K9me3 (ab8898) and H3K27me3 (ab6002) were obtained from Abcam, and all the other antibodies, including β-actin (sc-47778), eNOS (sc-654), ERβ (sc-137381) and SOD2 (sc-30080) were obtained from Santa Cruz Biotechnology. The mitochondrial fraction was isolated using a Pierce Mitochondria Isolation Kit (Pierce Biotechnology) according to manufacturers’ instructions. Nuclear extracts were prepared using the NE-PER Nuclear and Cytoplasmic Extraction Reagents Kit (Pierce Biotechnology). Protein concentration was measured using the Coomassie Protein Assay Kit (Pierce Biotechnology) according to manufacturers’ instructions.
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