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2 protocols using dot1l sirna

1

Inhibition and Knockdown of DOT1L in Cell Lines

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The specific DOT1L inhibitor EPZ-5676 was obtained from Chemietek. Lithium chloride and EX527 were purchased from Sigma, XAV-939 from Selleck and SRT1720 from Calbiochem. HiPerFect and all siRNAs except DOT1L siRNA were purchased from Qiagen (Supplementary Table 2). DOT1L siRNA and lipofectamine RNAimax were purchased from Invitrogen. Recombinant human WNT3A protein was purchased from R&D Systems.
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2

Targeting DOT1L in Breast and Lung Cancer Cell Lines

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Human cell lines BT549, MDA-MB231, MCF-7, MDA-MB157, HCC70, A549 and NB4 were obtained from the American Type Culture Collection (ATCC) and cultured using ATCC recommended conditions. Primary antibodies against H3K79me2, H3K27me3, H3K4me3, H3K36me2, H4K20me3, H3K9me-pan were purchased from Cell Signaling (Danvers, MA). siRNA experiments were performed by transfecting MDA-MB-231 cells with X-tremeGENE Transfection Reagent (Roche) and 10 nM siRNA (Invitrogen), according to the manufacturer's protocol. The sequences for DOT1L siRNA (Invitrogen) were:

siRNA-1: 634-CGCGAGUUCAGGAAGUGGAUGAAAU;

siRNA-2: 117-CGAUAAACAUCACGAUGCUGCUCAU;

siRNA-3: 104-CGCUGCCGGUCUACGAUAAACAUCA;

siRNA-4: 470-CCCAGAUGAUUGAUGAGAUCAAGAU;

siRNA-5: 120-UAAACAUCACGAUGCUGCUCAUGAA.

siRNA-`mock represents an siRNA that has no homology to any vertebrate transcriptome.

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