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117 protocols using β glucuronidase

1

Standardized Silymarin Flavonolignan Analysis

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Standardized silymarin, silybin (48% SA and 52% SB), β-glucuronidase (type B-10 from bovine liver), β-glucuronidase (from Escherichia coli), sulfatase (type H-1 from Helix pomatia), and naringenin (NG) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ultra Pool human liver microsomes (150 donors) and recombinant UGT1A1 were purchased from BD Biosciences (Bedford, MA, USA). Reference standards of silychristin and silydianin were purchased from ChromaDex (Santa Ana, CA, USA) and U.S. Pharmacopoeia (Rockville, MD, USA), respectively. Reference standards of SA and SB, isosilybin A and isosilybin B were obtained as a generous gift from Ulrich Mengs (Madaus GmbH, Cologne, Germany). The purity of all six silymarin flavonolignan standards was between 97% and 99%. All other chemicals and reagents were of analytical grade or higher and were purchased from commercial sources.
Silymarin (Legalon®, Lot No. 0418901) and matching placebo were manufactured in hard capsules by Madaus Rottapharm Group (Cologne, Germany). The flavonolignan content of each capsule was 23.2 mg, silybin A; 32.0 mg, silybin B; 11.8 mg, isosilybin A; 6.6 mg, isosilybin B; 24.9 mg, silychristin; and 29.0 mg, silydianin [21 (link)]. These six flavonolignans account for 70.8% (127.5 mg silymarin equivalent to 140 mg of silymarin) of the 180 mg milk thistle extract contained in each capsule.
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2

Chemical Standards for Analytical Assays

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Analytical standards of BPA (≥97%), enterolactone (95%), enterodiol (95%), daidzein (98%), equol (99%), genistein (98%), creatinine (99%) and β-glucuronidase (145700 units/mL β-glucuronidase and 887 units/mL sulfatase) were purchased from Sigma-Aldrich (St. Louis, MO, USA). O-DMA (98%) was purchased from Plantech (Reading, UK). Stable isotope-labeled standards, 13C12-BPA, D3-daidzein and D4-genistein were purchased from Cambridge Isotope Laboratories (Andover, MA, USA). D3-creatinine (99%) was purchased from CDN Isotopes (Pointe-Claire, QC, Canada).
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3

Quantification of Zearalenone Glucuronides

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ZON was purchased from Funakoshi Co. (Tokyo, Japan); high-performance liquid
chromatography (HPLC)-grade methanol was purchased from Wako Pure Chemical Industries
(Osaka, Japan); and β-glucuronidase was purchased from Sigma-Aldrich (St. Louis, MO, USA).
Zearalenone glucuronide (ZON-GA) and zearalenol glucuronide (ZOL-GA), purified from rat
bile after perfusion of the liver with ZON, were quantified by HPLC using the difference
between β-glucuronidase–treated and untreated samples and used as standards [14 (link)].
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4

Quantification of Bile Acids by LC-MS

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The abbreviations of BAs were named according to the proposed nomenclature in 1992 [30 (link)]. Standards of 33 unconjugated BAs, 27 conjugated BAs and 4 stable isotope labeled internal standards summarized in
Table 1 and Electronic Supplementary
Material (ESM) Tables S1 and S2
were purchased from Steraloids (Newport, RI, USA), TRC (Toronto, Canada), Santa Cruz
Biotechnology (Dallas, TX, USA) or Sigma-Aldrich (St. Louis, MO, USA). Sulfatase from Helix pomatia Type H-1 (SUL-1), Sulfatase
from abalone entrails Type VIII (SUL-2), Sulfatase from Patella vulgata Type IV (SUL-3), β-glucuronidase from Helix pomatia
Type H-1 (GLU-1), β-glucuronidase from limpets (GLU-2), β-glucuronidase from Helix aspersa Type HA-4 (GLU-3),
choloylglycine hydrolase from clostridium perfringens (CH), activated charcoal, sodium acetate, glacial acetic
acid, and LC-MS grade methanol, acetonitrile and formic acid were purchased from Sigma-Aldrich. Ultra-pure water was obtained by
using a Milli-Q system (Millipore, Bedford, MA, USA).
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5

Quantitative Analysis of Andrographolide Metabolites

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All analytical standards including andrographolide (purity = 100.00%); 14-deoxy-11, 12-didehydroandrographolide (purity = 99.80%); neoandrographolide (purity = 99.67%); and 14-deoxyandrographolide (purity = 100.00%) were purchased from Phytolab GmbH and Co.KG (Vestenbergsgreuth, Germany). The digoxin (purity >95.0%) used as an internal standard (IS) was obtained from Sigma-Aldrich (St. Louis, MO, United States). HPLC-grade acetonitrile and methanol were purchased from Merck (Darmstadt, FR, Germany). The liquid chromatography tandem mass spectrometry (HPLC-MS/MS) system was operated using a Milli-Q purification system (Millipore, Bedford, MA, United States) throughout the analytical procedures.
For metabolite analysis, β-glucuronidase (type IX-A from Escherichia coli) with a glucuronidase activity ranging from 1,000,000 to 5,000,000 units/g protein (tested glucuronidase activity = 2,354,185 units/g protein, re-tested on 04/02/2020), and sulfatase (type H-1 from Helix pomatia) with a sulfatase activity of ≥10,000 units/g solid (containing sulfatase activity = 16,134 units/g solid and β-glucuronidase activity = 353,820 units/g solid, analysis date 25/05/2021) were obtained from Sigma-Aldrich (St. Louis, MO, United States). Sodium hydrogen phosphate, sodium dihydrogen phosphate, glacial acetic acid and sodium acetate were obtained from Sigma-Aldrich (St. Louis, MO, United States).
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6

Analytical Standards for PAH Metabolites

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Sodium acetate, acetic acid, and potassium carbonate, all of analytical grade (Merck, Darmstadt, Germany), n-hexane “LiChrosolve” (Merck, Darmstadt, Germany), acetic anhydride of analytical grade (Riedel-de Haen, Seelze, Germany), and β-glucuronidase (102 100 units/mL of β-glucuronidase and 290 units/mL of sulfatase) (Sigma-Aldrich Chemie Gmbh, Steinheim, Germany), methyl-t-butyl ether of HPLC grade (Rathburn Chemicals Ltd, Walkerburn, UK). Analytical standards 2-OH-naphthalene, 1-OH-fluorene, 1-OH-phenanthrene, 1-OH-pyrene (Sigma-Aldrich Chemie Gmbh, Steinheim, Germany), and β,β′-binaphthyl were purchased from Larodan Fine Chemicals AB, Malmö, Sweden. Ethanol, acetone, and peanut oil were all of analytical grade.
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7

Bisphenol Exposure Analysis Protocol

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Bisphenols used included BPA (purity ≥ 99%, Cat#: 239658; Lot#: MKBQ5209V; Aldrich Chemical Co., Milwaukee, WI, USA), BPS (4,4’-sulfonyldiphenol, purity 99.7%, Cat#: 146915000, Lot#: A0337011, Acros Organics, Geel, Belgium), and BPF (purity 98%, Cat#: B47006; Lot#: 05712ME; Sigma-Aldrich, St. Louis, MO, USA) dissolved in corn oil. The internal standards 13C12-BPA (99%), 13C12-BPS (98%) and 13C12-BPF (99%) were purchased from Cambridge Isotope Laboratories (Andover, MA, USA). β-glucuronidase (≥100,000 units/mL β-glucuronidase; ≤ 7,500 units/mL sulfatase) from Helix pomatia (Type HP-2) was purchased from Sigma-Aldrich (St. Louis, MO, USA)
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8

Comprehensive Phthalate Metabolite Profiling

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A total of 11 phthalate metabolites were measured in the patient urine samples, as stated above.20 (link) The phthalate metabolites comprised monomethyl phthalate (MMP), MEP, mono-n-butyl phthalate (MBP), monocyclohexyl phthalate (MCHP), MBzP, MiBP, mono-2-ethylhexyl phthalate (MEHP), mono(2-ethyl-5-oxohexyl) phthalate (MEOHP), mono(2-ethyl-5-carboxypentyl) phthalate (MECPP), monooctyl phthalate (MOP), and monoisodecyl phthalate (MiNP).
The chemical urine sample analyses were conducted at the Fudan University of Public Health laboratory. The phthalates in the urine were analyzed via liquid chromatography–mass spectrometry–tandem mass spectrometry (American Agilent company) with ultra-performance liquid chromatography coupled with a tandem mass spectrometer and Quattro Premier XE following enzymatic deconjugation.20 (link)
Standards: MMP, MBP, MEHP, MNzP (chromatographically pure, Dr. Ehrenstorfer, Germany), MCHP, MEOHP, MiBP, MOP, MiNP (chromatographically pure, Toronto Research Chemicals, Canada), MEP (chromatographically pure, AccuStandard, USA), MECPP (chromatographically pure, Cambridge Isotope Laboratories, Inc., USA), internal standard (chromatographically pure, Cambridge Isotope Laboratories, Inc., USA), and β-glucuronidase (>99.99%, Merck Millipore, Germany). Other reagents are HPLC grade or pesticide residue grade.
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9

Caco-2 Cell Permeability of Flavonoids

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Orientin, isoOrientin, vitexin, isovitexin, schaftoside, isoschaftoside, luteolin, apigenin, and quercetin (>95%, reference substances) were purchased from Phytolab (Vestenbergsgreuth, Germany). Caco-2 cells were obtained from the ATCC (American Type Culture Collection, Manassas, VA, USA). Acetonitrile (LiChrosolv®), trifluoroacetic acid (TFA), dimethyl sulfoxide (DMSO), formic acid, sodium acetate, sulfatase (from Helix pomatia, type H-1, lyophilized, >10,000 U/g), β-glucuronidase (from bovine liver, type B-10, 10,100 U/g) methanol (LiChrosolv®), 3-(4,5-dimethylthiazolyl)-2,5-diphenyl tetrazolium bromide (MTT), and sodium dodecyl sulfate (SDS) were purchased from Merck (Darmstadt, Germany). Hanks’ balanced salt solution (HBSS) was obtained from Biowest (Nuaillé, France). Dulbecco’s modified Eagle medium (DMEM) was purchased from Life Technologies (Carlsbad, CA, USA). Phosphate-buffered saline (PBS), fetal bovine serum (FBS), trypsin-ethylenediaminetetraacetic acid (trypsin-EDTA), nonessential amino acids (NEAAs), penicillin, and streptomycin were purchased from Biochrom AG (Berlin, Germany). Transwell® plates (insert diameter 12 mm, pore size 3.0 µm, membrane growth area 1.12 cm2) were obtained from Corning Costar (Cambridge, MA, USA), and 96-well plates were purchased from TPP (Trasadingen, Switzerland).
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10

Glucosinolate Analytical Methods

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Boric acid solution (4%), hydrochloric acid (0.1 M), hydrochloric acid (32%), formic acid (FA; 98%), sodium hydroxide (100%), trichloroacetic acid (≥99%), Kjeldahl tablets, sulfuric acid (96–98%, p.a.), methanol (LC-MS grade), water (LC-MS grade), methylene blue, methyl red and methylene chloride (GC Ultra Grade, solvent) were purchased from Carl Roth GmbH & Co. KG (Karlsruhe, Germany). Pronase E (from Streptomyces griseus), pepsin (from porcine gastric mucosa), pancreatin (from porcine pancreas), β-glucuronidase (from Helix pomatia), DEAE Sephadex® A-25, 4-hydroxybenzyl glucosinolate potassium salt, 2-propenyl glucosinolate potassium salt, benzyl cyanide (≥98%), benzonitrile (≥99.9%), and benzyl isothiocyanate (≥98.5%) were obtained from Merck KGaA (Darmstadt, Germany). 1H-Imidazole was purchased from AppliChem GmbH (Darmstadt, Germany), boric acid (powder, pure) from Honeywell International Inc. (Seelze, Germany) and 4-(methylsulfinyl)butyl glucosinolate from PhytoLab GmbH & Co. KG (Vestenbergsgreuth, Germany). Sodium sulfate anhydrous (≥99%) was obtained from VWR International GmbH (Darmstadt, Germany). C18ec solid phase extraction cartridges (3 mL, 200 mg) were obtained from Machery-Nagel GmbH & Co. KG (Düren, Germany). The BITC-lysine and BITC-cysteine standards used were synthesized by Kühn et al. [23 (link)].
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