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12 protocols using ab211926

1

Immunohistochemical Analysis of TIMP1 in Thyroid Cancer

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IHC staining was conducted on a thyroid cancer tissue microarray established with formalin-fixed and paraffin-embedded surgical specimens.48 (link) Primary antibodies against TIMP1 (ab211926, Abcam, UK) were used. The level of TIMP1 expression was evaluated using the immunoreactivity score (IRS) calculated by multiplying the positive cell proportion (0: 0%, 1: 1% to 25%, 2: 26% to 50%, 3: 51% to 75%, 4: 76% to 100%) and staining intensity (0: negative, 1: weak, 2: moderate, 3: strong).49 (link) An IRS value of ≤ 6 was regarded as low expression, while IRS > 6 indicated high expression. For IHC staining in xenograft tumors, tumor tissues were sliced into 4.0 μm-thick sections. The tissue slides were deparaffinized, hydrated, and subjected to antigen retrieval. Then, the slides were incubated with primary antibodies against Ki-67 (ab15580, Abcam, UK) and TIMP1 (ab211926, Abcam, UK). After secondary antibody incubation and nuclear staining, the slides were imaged using a microscope.
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2

Western Blot Analysis of Extracellular Matrix Proteins

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Total protein was extracted from the cells using the M-PER mammalian protein extraction reagent (Pierce, Rockford, IL, USA). Equal quantities of protein (20 µg per lane) estimated by the bicinchoninic acid protein assay kit (Pierce) were loaded onto 11% SDS-PAGE and transferred onto nitrocellulose membranes. The blots were probed with a monoclonal antibodies against human collagen I (1:200, Cat#ab138492, Abcam, UK), α-SMA (1:500, Cat#ab5694, Abcam), tissue inhibitor of metalloproteinase (TIMP)1 (1:600, Cat#ab211926, Abcam), Lox (1:250, Cat#ab174316, Abcam), and β-actin (1:1200, Cat#ab8226, Abcam), followed by secondary horseradish peroxidase-conjugated antirabbit antibody (1:10,000, Cat#ab97080, Abcam). After washing, the bands were detected by chemiluminescence and imaged with X-ray films. β-Actin was used as an endogenous reference for normalization.
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3

Immunohistochemical Analysis of MMP-7 and TIMP-1 in GC

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In our study, immunohistochemistry staining was used to detect expression of MMP-7 and TIMP-1 proteins on tissue microarray slides containing formalin-fixed, paraffin-embedded tissue arrayed samples of GC patients. After routine baking and dewaxing, the slides were heated in a pressure cooker with EDTA for thirty minutes for antigen retrieval. The blocking of endogenous peroxidase was performed by using H2O2. The slides were incubated with primary antibodies against MMP-7 (ab205525, dilution: 1/150, Abcam, Cambridge, UK) and TIMP-1 (ab211926, dilution: 1/150, Abcam) for 1 hour and 30 minutes at room temperature, followed by further incubation with goat anti-rabbit IgG for 25 minutes at room temperature and washing 3 times with PBS for 5 minutes each time. 3,3′-Diaminobenzidine tetrahydrochloride (DAB) was applied to detect antigen-antibody complexes. Finally, the slides were counterstained with haematoxylin. Two pathologists who were blinded to the clinical data evaluated the immunohistochemical staining to determine expression of the two proteins. Positive expression was defined as the presence of brown granules in the cytoplasm and/or cell membrane of tumour cells.
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4

Immunohistochemical Analysis of TIMP-1 and Collagen I

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Sections with a thickness of 4 μm were cut, and slides were deparaffinized and rehydrated. The sections were pretreated and stained using the Omnis automated slide-processing system from Agilent (Glostrup, Denmark). The tissue sections were subjected to heat-induced epitope retrieval pretreatment using EnVision™ FLEX Target Retrieval Solution High pH (GV804, Dako Omnis, Agilent) for TIMP-1 or EnVision™ FLEX Target Retrieval Solution Low pH (GV805, Dako Omnis, Agilent) for collagen I for 30 min, followed by incubation with rabbit monoclonal antibodies against TIMP-1 (clone EPR18352, 1:500, ab211926, Abcam, Cambridge, UK) or collagen α1 (I) (E8F4L, 1:100, #72026, Cell Signaling, Danvers, MA, USA) for 30 min at 32 °C. The reactions were detected using the standard polymer technique EnVision™ FLEX/HRP Detection Reagent (GV800, Dako Omnis, Agilent), and signal intensity was enhanced using the EnVision™ FLEX+ Rabbit LINKER (GV809, Dako Omnis, Agilent) and visualized using EnVision™ Flex DAB+ Chromogen system (GV825, Dako Omnis, Agilent). Finally, the sections were counterstained with hematoxylin and mounted with Pertex. The immunostained sections were evaluated by a senior consultant pathologist (L.M.R.G.).
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5

Immunohistochemical Staining of CHI3L1, MSN, and TIMP1

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The tissue sections were incubated with anti-CHI3L1 (abcam, ab255297, 1:250), anti-MSN (abcam, ab151542, 1:250) or anti-TIMP1 (abcam, ab211926, 1:250) primary antibody overnight at 4° C. After washing three times, the sections were incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG secondary antibody for 20 minutes, followed by staining with diaminobenzidine. Finally, the sections were counterstained with hematoxylin.
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6

Quantifying MMP-9 and TIMP-1 in Menstrual Blood

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MMP-9 and TIMP-1 were assessed from menstrual blood through immunocytochemistry. To assess MMP-9 and TIMP-1 in menstrual blood, 1 mL (20 drops) of menstrual blood was collected during the 2nd or 3rd day of the menstrual cycle and diluted into 20 ml of preservative. Samples were incubated at room temperature for 30 min and centrifuged at 744× g for 15 min. The precipitate was diluted and transferred to a glass slide. Following antigen retrieval, sections were incubated in 0.3% H2O2 (30% stock H2O2 diluted in methanol) and washed in PBS for 2 × 5 s. Sections were incubated in blocking reagent for 2 × 5 minutes, after which the blocking reagent was tipped off the slide, and a primary antibody (anti-MMP9 antibody, 1:1000, ab38898, Abcam; recombinant anti-TIMP-1 antibody, 1:1000, ab211926, Abcam) was applied. Sections were incubated in primary antibody for 1 hour, washed in PBS for 3 times, 5 s each time, and incubated in secondary antibody (R.T.U Biotinylated Universal Secondary Antibody BP-1400, Vector), for 2 times, 5 s each time. Color was developed using chromogen 3,3′-diaminobenzidine (DAB), and the slides were counterstained using Mayer’s hematoxylin (Sigma). Sections were dehydrated in 70%, 80%, and 90% industrial methylated spirit (IMS) for 3 min each, and mounted in xylol for 3 min.
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7

Protein Expression Profiling in Cell Signaling

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The method was described in our previous publications 23 (link). The primary antibodies used were as follows: ESM1 (Abcam, ab103590 at 1/800 dilution), Akt (Abcam, ab8805 at 1/500 dilution), p-AKT (Abcam, ab38449 at 1/1000 dilution), mTOR (Abcam, ab245370 at 1/2000 dilution), p-mTOR (Abcam, ab109268 at 1/2000 dilution), MMP9 (Abcam, ab76003 at 1/2000 dilution), TIMP (Abcam, ab211926 at 1/1000 dilution), eNOS (Abcam, ab252439 at 1/1000 dilution), HIF-1α (Abcam, ab51608 at 1/500 dilution) and GAPDH (Abcam, ab181602 at 1/10000 dilution).
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8

Immunohistochemical Analysis of Colon Cancer

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Surgically resected colon cancer samples and matched nontumorous tissue were fixed in 10% formalin, embedded in paraffin, and processed as 4-µm continuous sections. IHC staining was performed according to the manufacturer’s instructions (UltraSensitiveTM SP; MXB, China). The antibodies used were as follows: SLC4A4 (1:100; ab187511; Abcam), TIMP1 (1:1000; ab211926; Abcam), NMUR1 (1:50; ab121959; Abcam), and TACR3 (1:100; ab124025; Abcam). Each sample was independently assessed by two pathologists and scored using a semiquantitative scoring system. The histoscores ranged from zero (minimum) to 300 (maximum).
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9

Protein Expression Analysis in CRSwNPs

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Proteins were extracted from CRSwNPs tissues or cells using radioimmunoprecipitation assay (Beyotime Institute of Biotechnology), and the concentrations were determined according to the standard protocols of BCA protein assay kit (Beyotime Institute of Biotechnology), respectively. The total protein (30 µg/well) in the supernatant was separated via SDS-PAGE on 10% gel, and then transferred to PVDF membranes. After blocking with 5% skimmed milk for 1 h at room temperature, the membranes were incubated overnight at 4°C with rabbit anti-MMP-2 (1:1,000; no. ab92536; Abcam), rabbit anti-MMP-9 (1:1,000; no. ab76003; Abcam), rabbit anti-TIMP-1 (1:1,000; no. ab211926; Abcam), rabbit anti-integrin β1 (1:1,000; no. ab52971; Abcam), rabbit anti-α-tubulin (1:5,000; no. ab18207; Abcam), rabbit anti-acetyl-α-tubulin (1:1,000; no. ab179484; Abcam) and rabbit anti-β-actin (1:5,000; no. ab8227; Abcam) antibodies. After three washes with TBS with 0.1% Tween-20, the immunoblots were incubated for 1 h at room temperature with goat alkaline phosphatase-labeled anti-rabbit antibody (1:1,000; cat. no. 14708; Cell Signaling Technology, Inc.). The immunoreactive bands were visualized using an enhanced chemiluminescence reagent (Beyotime Institute of Biotechnology). The blots were semi-quantified using ImageJ software (version 1.47; National Institutes of Health).
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10

Protein Expression Analysis in Transfected Cells

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Transfected cells were lysed with RIPA lysis buffer (Thermo, U.S.A.) containing protease inhibitors (Thermo, U.S.A.). The concentration of extracted protein was measured by using a BCA protein assay kit (Thermo, U.S.A.). Equal amounts of protein were separated with 10% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, U.S.A.). The membranes were then blocked with 5% non-fat milk in TBST for 1 h at room temperature, followed by incubation with primary antibodies of PIK3R3 (ab238509), cyclin D1 (ab16663), cyclin E1 (ab33911), CDK2 (ab32147), CDK4 (), p21 (ab109520), p27 (ab32034), MMP-2 (ab92536), MMP-9 (ab76003) and TIMP-1 (ab211926) (Abcam, U.S.A.) overnight at 4°C. Subsequently, the membranes were washed with TBST three times and probed with the corresponding horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology Inc., U.S.A.) for 2 h at room temperature. ECL reagent (Pierce) was used to detect the signals on the membranes.
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