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Zorbax 300sb c18 column

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Zorbax 300SB-C18 column is a high-performance liquid chromatography (HPLC) column designed for the separation and analysis of a wide range of compounds. The column features a porous silica-based stationary phase with a C18 bonded functional group, providing excellent retention and selectivity for a variety of analytes. The 300Å pore size and 5 μm particle size contribute to the column's efficient performance and high-resolution separations.

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71 protocols using zorbax 300sb c18 column

1

Peptide Purification via Semipreparative RP-HPLC

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A LC-20AT HPLC
system (Shimadzu Corp., Tokyo, Japan) was used for all peptide purification.
Oxidized peptides and bioorthogonal reaction products were purified
via a semipreparative RP-HPLC system using a Zorbax 300 SB-C18 column (9.4 mm × 250 mm, 5 μm; Agilent Technologies)
with a linear gradient from 10% to 40% solvent B over 30 min, where
solvent A was 0.05% TFA in H2O and solvent B was 0.043%
TFA in 90/10% (v/v) ACN/H2O. The flow rate was 4 mL/min,
and the UV absorbance was monitored at 215 and 280 nm. Fractions corresponding
to the peptide of interest were collected, pooled, and lyophilized.
Small-scale purifications were performed via analytical RP-HPLC
using either a Zorbax 300 SB-C18 column (4.6 mm ×
150 mm, 3.5 μm; Agilent Technologies) with a flow rate
of 1 mL/min or an analytical Kromasil 100-3.5-C18 column
(2.1 mm × 150 mm, 3.5 μm; Merck) with a flow rate of 0.2
mL/min. A linear gradient from 0% to 45% solvent B over 45 min was
used, where solvent A was 0.05% TFA in H2O and solvent
B was 0.043% TFA in 90/10% (v/v) ACN/H2O. The UV absorbance
was monitored at 214 and 280 nm.
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2

Preparative and Analytical HPLC Purification

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A Shimadzu LC-20AP (Shimadzu,
Japan) solvent delivery module equipped with an SPD-20A (Shimadzu)
UV/vis detector was used for preparative HPLC. Preparative HPLC was
performed using a Luna C8 column (Phenomenex; 15 μm, 250 mm
× 50 mm, 100 Å, 50 mL/min) or a Zorbax 300SB C18 column
(Agilent; 5 μm, 21.2 mm × 150 mm, 300 Å, 20 mL/min).
Semi-preparative HPLC was performed using a Zorbax 300SB C8 column
(Agilent; 5 μm, 9.4 mm × 150 mm, 300 Å, 3 mL/min).
A Shimadzu LC-40D XR (Shimadzu) solvent delivery module equipped with
an SPD-40V (Shimadzu) UV/vis detector and SIL-40 XR (Shimadzu) autosampler
was used for analytical HPLC. Analytical HPLC was performed using
a Zorbax 300SB C18 column (Agilent; 5 μm, 4.6 mm × 250
mm, 300 Å, 1 mL/min) or a Hypersil GOLD C18 column (Thermo Fisher
Scientific; 3 μm, 2.1 mm × 100 mm, 175 Å, 0.6 mL/min).
Gradients were run from solvent A (0.05% TFA/H2O) to solvent
B (0.05% TFA/90% ACN/H2O), and absorbance was monitored
at 214 and 280 nm. Peptide masses were confirmed by electrospray ionization
mass spectrometry (ESI-MS) on an API 2000 LC/MS/MS system (AB SCIEX)
or time-of-flight (TOF) LC/MS on a TripleTOF 5600 system (AB SCIEX)
equipped with an LC-30AD (Shimadzu) solvent delivery module, a SIL-30AC
(Shimadzu) autosampler, and a CTO-20A (Shimadzu) column oven.
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3

RP-HPLC Fractionation of Crude Samples

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The lyophilized crude sample mix was dissolved in buffer A and split in three for further separation by RP-HPLC on a Shimadzu Prominence (Rydalmere, Australia) using an analytical Grace Vydac C18 column (250 mm × 4.6 mm, 5 μm) and an Agilent Zorbax 300SB C18 column (150 mm × 2.1 mm, 5 μm) at a 1% gradient and a flow rate of 1 mL min−1 and 0.3 mL min−1 respectively. Buffer A consisted of 0.05% TFA and buffer B consisted of 90% acetonitrile 0.05% TFA. HPLC fractions were lyophilized and stored at −20 °C.
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4

Two-Dimensional Peptide Fractionation

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Chromatographic separation of the pooled samples was performed on an Acquity Ultra Performance LC system (Waters Corp., Milford, MA, USA). Tryptic digested and labeled peptides were first fractionated by a strong cation exchange (SCX) liquid chromatograph using a 0.5×23 mm, 5 µm, 300 Å column (Waters Corp.). Samples were loaded onto the column and eluted stepwise by injecting salt plugs of 10 different molar concentrations of 25, 50, 75, 100, 150, 200, 300, 400, 500, 1,000 mM of NH4Ac. Ten fractions were collected from the SCX column. Each of the fractions was then loaded onto a reverse phase (RP) column, ZORBAX 300SB-C18 column (5 µm, 300 Å, 4.6×50 mm; Agilent Technologies, Inc., Santa Clara, CA, USA). The flow rate used for separation on RP column was 0.4 µl/min. Buffer A was 5% acetonitrile, 95% water, 0.1% formic acid and buffer B was 95% acetonitrile, 5% water, 0.1% formic acid. Elution was performed using a gradient ranging from 5 to 45% buffer B for >90 min.
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5

Characterization of δ-elapitoxin-Cb1a

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Edman degradation was carried out by the Australian Proteome Analysis Facility (APAF, Sydney, Australia). Purified native calliotoxin was solubilised in ammonium bicarbonate (25 mM)/10% ACN and reduced using DTT (25 mM) at 56 °C for 0.5 h, followed by alkylation using iodoacetamide (55 mM) at room temperature for 0.5 h. The reaction mix was then desalted/purified by RP-HPLC using a Zorbax 300SB-C18 column (3 × 150 mm, Agilent, Santa Clara, CA, USA). The volume was reduced under vacuum and loaded onto a precycled, Biobrene-treated disc and subjected to 60 cycles of Edman N-terminal sequencing using an Applied Biosystems 494 Procise Protein Sequencing System (Applied Biosystems, Foster City, CA, USA), resulting in unambiguous identification of 47 amino acid residues. Venom gland transcriptomics were conducted by the IMB Sequencing Facility (Institute for Molecular Bioscience, The University of Queensland, St Lucia, Qld, Australia). Libraries were prepared with the TruSeq Stranded mRNA kit (Illumina, San Diego, CA, USA), and were sequenced on the Illumina NextSeq (Illumina) 500 using 2 × 150 bp reads and V2 chemistry. To identify the full sequence of δ-elapitoxin-Cb1a, forward and reverse sequences were merged using MacQIIME (Werner Lab, SUNY Cortland, NY, USA) join_paired_end.py and matched to the sequence determined by Edman degradation using standalone BLAST.
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6

Quantifying Encapsulation of Simvastatin in Nanostructured Lipid Carriers

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The content of SV in NLCs was determined by high-performance liquid chromatography system (HPLC), equipped with an Agilent ZORBAX 300SB-C18 column (4.6 mm × 250 mm, 5 μm) with a constant flow rate of 1 mL/min and ultraviolet detection at a wavelength of 238 nm. To test the encapsulation efficiency (EE%) and drug loading (DL%), the formulated SV/NLCs dispersions with the original carriers concentration were flocculated by adding 1 M of hydrochloric acid until the pH value was adjusted to 1.2. The SV/NLCs aggregation was separated via centrifugation (3K30, Sigma Labrorzentrifugen GmbH, Germany) at 20 000 rpm for 30 min. The SV concentration in the supernatant was measured. The EE% and DL% of SV in the NLCs were calculated by the following equations:
EE%=(Ma-Ms)/Ma×100%
DL%=(Ma-Ms)/(Ma+Mc-Ms)×100%
where Ms indicates the mass of SV in supernatant. Ma indicates the mass of SV added in the system. Mc indicates the mass of lipid added in the system.
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7

Nano LC-ESI-MS/MS Protein Identification

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Protein identification was performed using nano LC-ESI-MS/MS. The MS system consisted of an Agilent 1100 nanoLC system (Agilent), PicoTip electrospray emitter (New Objective) and an Orbitrap XL mass spectrometer (Thermo-Fisher). Protein spots from the membranes were in-gel digested by trypsin (Promega) (with and without citraconic anhydride treatment) and applied to nanoLC-ESI-MS/MS. Peptides were trapped and desalted on the enrichment column (Zorbax SB C18; 0.3x5 mm; Agilent) for five minutes using 2.5% acetonitrile/0.5% formic acid as eluent, then peptides were separated on a Zorbax 300 SB C18 column (75µmx150mm; Agilent) using an acetonitrile/0.1% formic acid gradient from 5 to 35% acetonitril within 40 minutes. MS/MS spectra were recorded data-dependently by the mass spectrometer, according to manufacturer's recommendations.
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8

Identification of Synthetic Peptides by LC-MS/MS

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The mixture consisting of 19 synthetic peptides obtained from the Challenge organizing team was analyzed using Dionex Ultimate 3000 (Thermo Fisher Scientific) connected to a Hybrid Ion Trap-Orbitrap Elite mass spectrometer (Thermo Fisher Scientific), equipped with a nanoelectrospray ion source (Thermo Scientific). Peptides were loaded onto the trap column Zorbax 300SB-C18 (C18 5 μm 0.3 mm inner diameter and 5 mm length, Agilent Technologies, USA) and washed for 5 min at a flow rate of 10 μl/min. Peptide separation was performed on a RP-HPLC Zorbax 300SB-C18 column (C18 3.5 μm 75 μm inner diameter and 150 mm length, Agilent Technologies, USA) using a linear gradient from 5% to 60% solvent B (0.1% formic acid, 80% acetonitrile) over 30 min at a flow rate of 0.4 μl/min.
CID has been used as a fragmentation method. Both MS and MS/MS spectra have been obtained in an orbitrap analyzer. Resolution was set at 60,000 (m/z400) for MS and 15,000 (m/z400) for MS/MS scans.
The mass spectra have been analyzed using the trial version of PEAKS (Bioinformatics solutions Inc.) [1 ] and SearchGUI [2 ] with the parameters described in the next section.
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9

Fingerprint Analysis of Compounds by HPLC-DAD

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Chromatographic analysis was performed using an Agilent 1260 liquid chromatography system (Agilent Technology, Inc., Santa Clara, CA, USA), which was equipped with a G1311C quat pump, a G1329B autosampler, a G1316A column compartment, and a G1315D diode array detection (DAD) system. The obtained data were analyzed on an Agilent open LAB CDS ChemStation C.01.04. The analysis of fingerprint was carried out at 25 °C on an Agilent ZORBAX 300SB-C18 column (4.6 × 250 mm, 5 μm). The elution gradient of eluents A (acetonitrile with 0.1% TFA) and B (water with 0.1% TFA) was used for the separation of the target analytes. The gradient program was as follows: 0–40 min, 5–77% A; 40–58 min, 77–95% A. Each run was followed by an equilibration time of 5 min. The UV absorbance was monitored at 215 nm, and the solvent flow rate was kept at 1.0 mL/min. All injection volumes of both the samples were 5 μL.
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10

Protein Extraction and RP-HPLC Analysis

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Flour (60 mg) was extracted using 70% ethanol and vortex for 30 min in a horizontal vortex (MO BIO Laboratories Inc., Vortex-Genie 2). Samples were centrifuged for 15 min at 13,000 rpm using an Eppendorf Centrifuge 5424. Supernatant was filtered using a 0.45-μl filter into an HPLC glass vial. The protein extracts were separated using an Agilent 1200 LC system (Agilent Technologies) and the method of Larroque et al. (41 ). Extract (10 μl) was injected into a C18 reverse-phase ZORBAX 300SB-C18 column (4.6 × 150 mm, 5 μm, 300 Å; Agilent Technologies) maintained at 60°C. The eluents used were ultrapure water (solvent A) and ACN (solvent B), each containing 0.1% TFA (HPLC-grade, Sigma-Aldrich). The flow rate was adjusted to 1 ml/min. Protein was separated using a linear gradient from 21 to 47% of solvent B in 55 min and detected by UV absorbance at 210 nm. Every sample was sequentially injected twice for technical replication. RP-HPLC peak areas (expressed in arbitrary units) under the chromatograms were used to calculate gliadin amounts. ω-Gliadins were considered between 15 and 30 min; γ-gliadins, between 40 and 55 min; and α-gliadins, between 30 and 40 min. Individual peaks were collected as separate RP-HPLC fractions, freeze-dried, and resuspended in 100 μl of 70% ethanol.
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