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7 protocols using ps108

1

Western Blotting Protocol for Protein Analysis

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Western blotting was performed as described previously [24 (link)]. The tissues were homogenized in RIPA lysis buffer (P0013B, Beyotime) containing a protease inhibitor (GRF101, Epizyme). The samples were separated on a 10% SDS–PAGE gel, and the proteins were transferred onto a nitrocellulose membrane, which was blocked in protein-free rapid blocking buffer (PS108, Epizyme). The membranes were incubated with the primary antibody (Additional file 1: Supplementary Table 4) overnight at 4 °C, washed and incubated with IRDye-conjugated secondary antibodies (LI-COR, Lincoln, NE) for 1 h at room temperature. Images were obtained using an Odyssey infrared imaging system (LI-COR). Quantitative analysis was performed using ImageJ software (National Institutes of Health, USA).
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2

Protein Expression Analysis Protocol

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The lysates were obtained using RIPA buffer (Sigma, USA) premixed with a protease inhibitor cocktail kit (Thermo, USA). Nuclear proteins were extracted using a nuclear and cytoplasmic protein extraction kit (Sangon, China, #C510001). Cells were lysed for 30 minutes and then centrifuged for five minutes at 12,000 ×g at 4°C. Next, the supernatant containing protein was resolved on a 10% acrylamide‐bisacrylamide gel (EpiZyme, China, #PG112), and the proteins were transferred onto a 0.45‐μm PVDF membrane (Millipore, Germany, #IPVH00010). Membranes were blocked using protein-free rapid blocking buffer (EpiZyme, #PS108) and then were incubated with primary antibodies at 4°C overnight, followed by a 1-hour incubation with horseradish-peroxidase (HRP)-conjugated secondary antibodies at room temperature. The primary antibodies used were as follows: anti-TLR4 (1:2000, ABclonal, China, #A17436), anti-NF‐κB p65 (1:3000, Cell Signaling, USA, #8242S), anti-IkBα (1:2000, Proteintech, China, #10268-1-AP), anti-β-actin (1:1000, Beyotime, China, #AF0003), and anti-GAPDH (1:2000, Proteintech, #10494-1-AP). All experiments were performed in triplicate.
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3

Western Blot Analysis of Cellular Proteins

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1 × 106 cells were harvest and resuspended in 40 μL 2× protein loading buffer supplemented with 5% β-mercaptoethanol (Amersham, CT) and 40 μL 2× proteinase inhibitor (PI) (k1007A, pexBio). Then the suspensions were boiled at 99 °C for 10 min to denature protein. Prepared proteins were separated by 10% vertical SEMS-polyacrylamide gel (PG112, EpiZyme) based on the different molecular size. The separated proteins were then transferred to a PVDF membrane at 200 mA, 2 h. Next, the membrane was blocked with protein free rapid blocking buffer (PS108, EpiZyme) for 1 h at room temperature and then incubated with primary antibodies overnight at 4 °C on a shaker and with second antibodies at room temperature for 1 h. Last, the protein signals were measured using SuperSignal West Pico PLUS (34580, Thermo Scientific) and visualized with a ChemiDoc MP Imaging System (BioRad). Primary antibodies were used as follows: anti-TUBLIN (T3559, Sigma), anti-UBE2S (14115-1-AP, Proteintech), anti-CHMP4B (13683-1-AP, Proteintech), anti-H2A.X (ab11175, abcam), anti-γH2A.X (9718S, Cell Signaling Technology), anti-ERK1/2 (AF1051, Beyotime), anti-p-ERK1/2 (AF5818, Beyotime).
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4

Western Blot Analysis of Bone and Apoptosis Markers

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The protein was extracted from the cells using radio immunoprecipitation assay (PC101, RIPA) lysis buffer (EpiZyme, Shanghai, China). The protein concentration was determined using Thermo Scientific™ Pierce™ BCA (23227). An equal amount of protein was separated by 10–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). After blocking with protein-free fast blocking buffer (PS108, EpiZyme), it was incubated with primary antibodies against Runx2 (Affinity, AF5186), Bcl-2 (Affinity, AF6139), Caspase-3 (Huabio, ET1608–64), and GAPDH (EpiZyme, LF205) at 4 °C overnight, and then incubated with the secondary antibody at 37 °C for 1 h. Thereafter, the proteins were visualized using Omni ECL reagent (SQ201, ECL; EpiZyme) under e-Blot (Touch Imager, Shanghai, China). The gray densitometric was analyzed using Image J (USA).
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5

Western Blot Analysis of ER Stress Markers

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Total protein was extracted from A549 cells and lung tissues using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China). After the proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, they were transferred to membranes, which were blocked with Protein Free Rapid Blocking Buffer (PS108, EpiZyme) and incubated with primary antibodies against CHOP (A5462, Bimake), BiP (11587-1-AP; Proteintech, Wuhan, China), ATF6 (D262665, Sangon, China), ATF4 (A5514, Bimake), XBP-1s (24868-1-AP, Proteintech), XBP-1u (25997-1-AP, Proteintech), IRE1α (A00683-1, Boster, Wuhan, China), phospho-IRE1α (S724, human) (ab124945, Abcam, Cambridge, UK), phospho-IRE1α (S724, mouse) (530878, ZEN-BIO, Chengdu, China), Vimentin (ET1610-39, HuaBio, Hangzhou, China), and E-cadherin (340341, ZEN-BIO) overnight. GAPDH (bs-0755R, Bioss, Beijing, China) was used as the internal reference protein. After incubation with HRP-conjugated goat anti-rabbit IgG (H + L) (AS014, ABclonal, Wuhan, China) and HRP-conjugated goat anti-mouse IgG (H + L) (AS003, ABclonal), the protein bands were visualized using a ChemiDoc™ Imaging System (Bio-Rad) and quantified using NIH ImageJ software (http://rsb.info.nih.gov).
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6

Protein Extraction and Western Blot Analysis

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The proteins were extracted and separated using the Epizyme (#PG112) kit before being transferred to a PVDF membrane (Epizyme, #WJ001). For 10 min, a protein-free rapid-blocking solution (Epizyme, #PS108) was used to block the cells. The primary antibody was incubated at 4°C overnight before being rinsed three times for 10 min with Tris-buffered saline containing Tween 20 (TBST). The secondary antibodies were then incubated at room temperature for another 1 h. The Bio-Rad X-ray development system was used to obtain the results after the ECL luminescent substrate (Tanon, #180-501) was added dropwise to the membrane (Bio-Rad, CA, USA). The loading control was -Actin, and the data were analyzed using Image J software. The antibodies used for Western Blot in this study are listed in Supplementary Table 1.
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7

Western Blot Analysis of Chondrocytes

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Western blot analysis was performed as described previously10 (link). Briefly, the total cellular protein was isolated from human and mouse chondrocytes and SW1353 cells using radioimmunoprecipitation assay lysis buffer (Beyotime Biotechnology) containing protease inhibitors (1:100, Abcam, Cambridge, UK). Electrophoresis was started at 80 V for 20 min and then continued using 120 V for 1 h, followed by 250 mA transfer for 1.5 h. After blocking for 15 min with protein-free rapid blocking buffer (PS108, Epizyme, Shanghai, China), the membranes were incubated overnight at 4 °C with primary antibodies (Supplementary Table 2). Following incubation, the membranes were treated with the corresponding horseradish peroxidase-conjugated secondary antibodies (1:3000, Cell Signaling Technology, Danvers, MA, USA) at 20–25 °C for 1 h. The protein bands were detected using a ChemiDoc Touch (Bio-Rad Laboratories, Hercules, CA, USA) and analyzed using Image LabTM (Bio-Rad Laboratories). The intensity of bands was compared using ImageJ software (NIH, Bethesda, MD, USA).
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