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Carbodiimide nhs ester coupling

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Carbodiimide-NHS ester-coupling is a chemical conjugation technique commonly used in biomolecular research. It facilitates the formation of amide bonds between carboxyl groups and primary amines. The reaction is initiated by a water-soluble carbodiimide, such as EDC, and stabilized by N-hydroxysuccinimide (NHS) or its sulfo derivative (Sulfo-NHS). This method allows for the covalent attachment of various biomolecules, including proteins, peptides, and small molecules.

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8 protocols using carbodiimide nhs ester coupling

1

Profiling Humoral Immune Responses

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Serum samples were analyzed by customized Luminex assay to quantify the relative concentration of antigen-specific antibody isotypes, subclasses, and Fcγ-receptor (FcγR) binding profiles, as previously described.77 (link)
,78 (link) Briefly, SARS-CoV-2 antigens were used to profile specific humoral immune responses. Antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher). Antigen-coupled microspheres were washed and incubated with plasma or serum samples at an appropriate sample dilution (1:5000 for IgG1 and all low affinity FcγR, and 1:200 for all other readouts) for 2 h at 37°C in 384-well plates (Greiner Bio-One). Unbound antibodies were washed away, and antigen-bound antibodies were detected by using a PE-coupled detection antibody for each subclass and isotype (IgG1, IgG3, IgA1, and IgM; Southern Biotech), and FcγR were fluorescently labeled with PE before addition to immune complexes (FcγR2a, FcγR3a; Duke Protein Production facility). After one hour of incubation, plates were washed, and flow cytometry was performed with an iQue (Intellicyt) and analyzed using IntelliCyt ForeCyt (v8.1). PE median fluorescent intensity (MFI) is reported as a readout for antigen-specific antibody titers.
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2

Antibody-dependent Complement Deposition Assay

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Antibody-dependent complement deposition (ADCD) was conducted as previously described.79 (link) Briefly, SARS-CoV-2 antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher). Coupled beads were incubated for 2 h at 37°C with serum samples (1:10 dilution) to form immune complexes and then washed to remove unbound immunoglobulins. To measure antibody-dependent deposition of C3, lyophilized guinea pig complement (Cedarlane) was diluted in gelatin veronal buffer with calcium and magnesium (GBV++) (Boston BioProducts) and added to immune complexes. Subsequently, C3 was detected with an anti-C3 fluorescein-conjugated goat IgG fraction detection antibody (Mpbio). Flow cytometry was performed 5 Laser LSR Fortessa Flow Cytometer and analyzed using FlowJo V10.7.1. ADCD was reported as the median of C3 deposition.
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3

Antibody-Dependent Complement Deposition Assay

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Antibody-dependent complement deposition (ADCD) was conducted as previously described (59). Briefly, SARS-CoV-2 antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher Scientific). Coupled beads were incubated for 2 hours at 37°C with serum samples (1:10 dilution) to form immune complexes and then washed to remove unbound immunoglobulins. In order to measure antibody-dependent deposition of complement component 3 (C3), lyophilized guinea pig complement (Cedarlane) was diluted in gelatin veronal buffer with calcium and magnesium (GBV++) (Boston BioProducts) and added to immune complexes. Subsequently, C3 was detected with an anti-C3 fluorescein-conjugated goat IgG fraction detection antibody (Mpbio). Complement deposition is reported as mean fluorescent intensity (MFI) (fig. S3). Flow cytometry was performed with iQue (Intellicyt) and an S-Lab robot.
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4

SARS-CoV-2 ADCD Assay Protocol

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Antibody-dependent complement deposition (ADCD) was conducted as previously described49 (link). Briefly, SARS-CoV-2 antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher). Coupled beads were incubated for 2 hours at 37°C with serum samples (1:10 dilution) to form immune complexes and then washed to remove unbound immunoglobulins. In order to measure antibody-dependent deposition of C3, lyophilized guinea pig complement (Cedarlane) was diluted in gelatin veronal buffer with calcium and magnesium (GBV++) (Boston BioProducts) and added to immune complexes. Subsequently, C3 was detected with an anti-C3 fluorescein-conjugated goat IgG fraction detection antibody (Mpbio). The flow cytometry was performed with iQue (Intellicyt) and an S-Lab robot (PAA). ADCD was reported as the median of C3 deposition.
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5

SARS-CoV-2 Antibody-Dependent Complement Deposition

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Antibody-dependent complement deposition was conducted as previously described (38 (link)). Briefly, SARS-CoV-2 antigens were coupled to magnetic Luminex beads (Luminex Corp.) by carbodiimide-NHS ester-coupling (Thermo Fisher). Coupled beads were incubated for 2 h at 37°C with serum samples (1:10 dilution) to form immune complexes and then washed to remove unbound immunoglobulins. Lyophilized guinea pig complement (Cedarlane) was diluted in gelatin veronal buffer with calcium and magnesium (GBV++; Boston BioProducts) and added to immune complexes to measure antibody-dependent deposition of C3. C3 was then detected with an anti-C3 fluorescein-conjugated goat IgG fraction detection antibody (MP Bio). Flow cytometry was performed using iQue (IntelliCyt) and an S-Lab robot (PAA). ADCD was reported as the median fluorescence of C3 deposition.
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6

Quantification of SARS-CoV-2 Antibody Subclasses and FcγR Binding

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Serum samples were analyzed by a customized Luminex assay to quantify the levels of antigen-specific antibody subclasses and FcγR binding profiles, as previously described.52 (link),53 (link) Briefly, SARS-CoV-2 antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher). Antigen-coupled microspheres were washed and incubated with plasma samples at an appropriate sample dilution (1:100 for antibody isotyping and 1:1000 for all low-affinity FcγRs) overnight in 384-well plates (Greiner Bio-One). Unbound antibodies were washed away, and antigen-bound antibodies were detected by using a PE-coupled detection antibody for each subclass and isotype (IgG1, IgG2, IgG3, IgA1, and IgM; Southern Biotech), and FcγRs were fluorescently labeled with PE before addition to immune complexes (FcγR2a, FcγR2b, FcγR3a, FcγR2b; Duke Protein Production facility). After 1 h of incubation, plates were washed, and flow cytometry was performed with an iQue (Intellicyt), and analysis was performed on IntelliCyt ForeCyt (v8.1). PE median fluorescent intensity (MFI) is reported as a readout for antigen-specific antibody titers.
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7

Multiplexed Complement Activation Assay

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ADCD was conducted using a 384-well based customized multiplexed assay. Protein antigens were coupled to magnetic Luminex beads (Luminex Corp) by carbodiimide-NHS ester-coupling (Thermo Fisher). OPS and LPS antigens were modified by 4-(4,6-dimethoxy[1,3,5]triazin-2-yl)-4-methyl-morpholinium and conjugated to Luminex Magplex carboxylated beads Schlottmann et al., 2006 (link)). To form immune complexes, a mix of four antigen-coupled beads was incubated for 2 h at 37°C with diluted samples (1:10) and then washed to remove unbound immunoglobulins. Lyophilized guinea pig complement (Cedarlane) was resuspended according to manufacturer’s instructions and diluted in gelatin veronal buffer with calcium and magnesium (Boston BioProducts). Resuspend guinea pig complement was added to immune complexes and incubated for 20 min at 37°C. Post incubation, C3 was detected with Fluorescein-Conjugated Goat IgG Fraction to Guinea Pig Complement C3 (Mpbio).
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8

Analyzing SARS-CoV-2 Antibody Subclasses

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SARS-CoV-2 specific antibody subclass and isotypes, and FcγR binding was analyzed using a custom Luminex multiplexed assay36 (link). SARS2-CoV2-RBD, SARS2-CoV2-N, and SARS2-CoV2-S were coupled to magnetic Luminex beads (Luminex Corp, TX, USA) by carbodiimide-NHS ester-coupling (Thermo Fisher). Dilution curves were performed on pooled samples from the cohort to determine dilutions in the linear range for each detection reagent. Coupled beads were then incubated with different plasma dilutions (between 1:100 and 1:1000 depending on the secondary reagent) for 2 h at room temperature in 384-well plates (Greiner Bio-One, Germany). Unbound antibodies were washed away and PE-conjugated antibody (Southern Biotech, AL, USA, see Life Science Reporting Summary) at a 1:100 dilution used to detect IgG1 (#9054-09), IgG3 (#9210-09), IgM (#9020-09) or IgA1 (#9130-09), respectively. For the FcγR3b binding, a PE-Streptavidin (Agilent Technologies, CA, USA) coupled recombinant biotinylated human FcγR3b protein (Duke Protein Production Facility) was used as a secondary probe. After 1h incubation, the excessive secondary reagent was washed away and the relative antibody concentration per antigen determined on an IQue analyzer (IntelliCyt, NM, USA). Samples with mean signals plus five times the standard deviation of the PBS-control wells were considered as positive.
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