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P aeruginosa

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P. aeruginosa is a laboratory culture strain commonly used in research and testing applications. It is a Gram-negative, aerobic bacterium that is widely distributed in the environment. This strain can be utilized for various microbiological studies and assays.

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7 protocols using p aeruginosa

1

Isolates From American Type Culture Collection

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Isolates used in this study were obtained from the American Type Culture Collection (ATCC): H. influenzae (ATCC 49766), S. aureus, (ATCC 29213), S. pneumoniae (ATCC 49619) and P. aeruginosa (ATCC 27853). All isolates were stored at -80 °C prior to inoculation onto chocolate blood agar (H. influenzae: Oxoid, Basingstoke, UK) or blood agar (S. aureus, S. pneumoniae, P. aeruginosa: Oxoid, Basingstoke, UK) and incubated at 37 °C in 5% CO2 (H. influenzae, S. pneumoniae), or in air (S. aureus, P. aeruginosa).
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2

Detailed Protocol for Bacterial Strains

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All strains used in this study are listed in Additional file 3: Table S1. S. aureus strain XN108 (MRSA and VISA) was isolated from a burn patient with skin wound infection and bacteremia [24 (link)]. Methicillin-sensitive S. aureus (MSSA) ATCC 25923, A. baumannii ATCC 19606, and P. aeruginosa PAO1 were purchased from China Center for Type Culture Collection. E. coli strains DH5a and BL21 (DE3) were purchased from TransGen Biotech (China). S. aureus strains were cultivated in brain heart infusion (BHI) medium (Oxoid) or BHI agar (BHIA). E. coli, A. baumannii, and P. aeruginosa strains were grown in Luria Bertani (LB) medium (Oxoid). When appropriate, the broth media or agar plates were supplemented with ampicillin (AMP, 100 µg/mL).
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3

Antibacterial Assay of Diverse Pathogens

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Antibacterial activity was measured by modifying the method of Brandt et al. (19 (link)). E. coli (KCTC 1682), Vibrio paraheamolyticus (KCTC 2729), Pseudomonas aeruginosa (KCTC 1750), Shigella sonnei (KCTC 2518), and Shigella flexneri (KCTC 22192) were purchased from the Korean Collection for Type Cultures (Daejeon, Korea). All samples (10 mg/mL) were dissolved in 50 mM potassium phosphate buffer (pH 7.0) and filtered through a sterilized 0.2 μm syringe filter (Millipore, Temecula, CA, USA). The bacterial cells were incubated in brain heart infusion broth (Oxoid Ltd., Basingstoke, England) for E. coli, P. aeruginosa, S. sonnei, and S. flexneri, and tryptic soy broth (17 g/L of pancreatic digest of casein, 3 g/L of papaic digest of soybean, 2.5 g/L of dextrose, 5 g/L of sodium chloride, and 2.5 g/L of dipotassium phosphate) with 3% NaCl for V. parahaemolyticus at 37°C for 16 h, diluted with 200 μL of a liquid medium inoculated at about 106 CFU/mL, and 100 μL of the samples were mixed with the bacteria in 96-well plates. Sterilized liquid medium (100 μL) was used as a control, and samples were cultured at 37°C for 24 h. Using a microplate reader, the absorbance values were compared at 600 nm during the incubation period, and data is expressed as growth inhibition rate (%).
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4

Antimicrobial Susceptibility Testing Protocol

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The test bacterial strains were acquired from the American Type Culture Collection (ATCC). S. aureus (ATCC 6538), S. epidermidis (ATCC 12228), P. aeruginosa (ATCC 13388), E. coli (ATCC 11229), and K. pneumoniae (ATCC 10031) were plated on Mueller Hinton (MH) agar (Oxoid, Hampshire, MA, USA) at 37 °C in aerobic condition overnight. Thereafter, the bacterial preinoculate was prepared by inoculating colonies of each bacterial strain in MH broth and then incubating at 37 °C overnight. The latter was resuspended in fresh broth until the exponential phase was reached. The inoculum was serially diluted to achieve the bacterial concentration of 5 × 105 colony-forming units/mL (CFU/mL), required for the assays.
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5

Antibiotic Susceptibility Testing Protocols

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Control strains S. aureus ATCC29213, S. aureus ATCC12598, S. aureus ATCC BAA-1556 (USA300), S. aureus ATCC 700699 (Mu50-NRS1), E. faecalis ATCC29212, E. faecalis ATCC51299, A. baumannii ATCC17978; E. coli ATCC25922, P. aeruginosa ATCC27853, K. pneumoniae ATCC700603; and the MDR strain K. pneumoniae ATCC BAA-2814 were obtained from the American Type Culture Collection (Manassas, VA, USA).
S. aureus was grown on Mannitol Salt Agar (CM0085B, Thermo Scientific™ Oxoid™, Basingstoke, UK); E. faecalis and E. faecium on Bile Esculine Agar (CM0888, Thermo Scientific™ Oxoid™, Basingstoke, UK); and A. baumannii, E. coli, P. aeruginosa, and K. pneumoniae on MecConkey agar (CM0007, Thermo Scientific™ Oxoid™, Basingstoke, UK) at 37 °C for 24 h.
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6

Bacterial Biofilm Formation and Decontamination

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Bacterial strains Staphylococcus epidermidis (CCM 7221), methicillin-resistant Staphylococcus aureus (CCM 4750 = ATCC 43300), and Escherichia coli (CCM 3988 = ATCC 10536) were obtained from the Czech Collection of Microorganisms (Masaryk University, Brno, Czech Republic). The Pseudomonas aeruginosa (FB 45) strain was obtained from the Collection of Microorganisms of St. Anne’s University Hospital in Brno (Czech Republic). Bacteria were grown in the brain heart infusion broth (S. aureus, S. epidermidis, and E. coli) or tryptic soy broth (P. aeruginosa) (Thermo Fisher Scientific Inc., Oxoid, UK). Single-species bacterial biofilms were grown on PP-NT coupons with a diameter of 1 cm for further decontamination by MSDBD generated PAWV/PAWA. Briefly, overnight bacterial culture was inoculated in a fresh medium and grown to the optical density of 0.5 McFarland standard (ca. 108 CFU/mL). Then, bacterial suspensions were diluted 100 times with fresh medium supporting biofilm formation (BHI or TSB medium supplemented with 1% glucose). Biofilm was formed during cultivation at 37 °C for 20 h.
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7

Antibacterial Nanofiber Activity Assay

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E. coli ATCC25922, S. aureus ATCC25923, S. Typhimurium ATCC14028, P. aeruginosa ATCC27853 strains were obtained from Remel™, Thermo Fisher Scientific, USA, and Becton Dickenson, France. The bacterial strains were grown in liquid Lysogeny broth (LB) medium at 37 °C for 24 h and then were diluted in saline to give concentrations of 0.675–2.5 × 105 colony-forming units (CFU) mL−1. Antibacterial activity against each strain was determined by the emersion of nanofibers (round samples in diameter 0.5 cm) in a medium volume of 300 µL with bacteria for 24 h. The number of viable microorganisms was estimated via counting of CFU after 24 h of cultivation. All experiments were performed in triplicate.
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