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5 protocols using anti fli1

1

Western Blotting Antibody Validation

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Western blotting experiments were performed as previously described 19 (link). The following antibodies were used: anti-Actin (Millipore, Billerica, MA, USA; cat. no. MAB1501); anti-CD99 (sc-53148), anti-Delta (sc-9102), anti-Delta-3 (sc-67270), anti-FLI1 (sc-356), anti-GAPDH (sc-25778), anti-Lamin-B (sc-6216), anti-NF-kBp65 (sc-372), anti-Notch 1 (sc-6014_R) and anti-Notch 3 (sc-5593) (Santa Cruz Biotechnology, Dallas, TX, USA); anti-Phopsho-NF-kBp65 (Ser536) (Cell Signaling Technology, Beverly, MA, USA; cat. no. 3031); anti-α-Tubulin (Sigma Aldrich; cat. no. T5168); anti-rabbit or anti-mouse antibodies conjugated to horseradish peroxidase (GE Healthcare; cat. no. NA934V, NA931V) were used as secondary antibodies. Proteins were visualized by incubating with ECL (EuroClone, Milan, Italy).
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2

Antibody-based Western Blotting and Immunoprecipitation

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Antibodies used for Western blotting included anti-Myc, anti-Flag, anti-HA, anti-pJNK, anti-JNK, anti-pIKK, anti-TAK1, anti-pTAK1, cleaved caspase 3, and anti-β-tubulin from Cell Signaling. Anti-Fli1 and anti-iNOS were purchased from Santacruz Biotechnology, and anti-TRB3 antibodies were a gift from Dr Marc Montminy, Salk Institute. For immunofluorescence, mouse anti-BAX clone 6A7 (BD Bioscience), sheep anti-insulin (Binding Site), and In Situ Cell Death Detection Kit (Fluorescein) from Roche were purchased from commercial sources. Agarose-conjugated antibodies used for immunoprecipitations included anti-HA agarose (Thermo Fisher Scientific) and anti-FlagM2 agarose (Sigma-Aldrich). Streptavidin-Agarose was purchased from Pierce. Immunofluorescence and Western blotting employed fluorescent or HRP-conjugated secondary antibodies (Jackson ImmunoResearch), the latter detected using Supersignal West-Pico Plus chemiluminescence reagent (Thermo Fisher). Other reagents include IL-1β (Peprotech) and ultrapure TLR4-specific LPS (InvivoGen). Flag-TRB3 adenovirus was generated as described 3). Smartpool TARGETplus siRNA was used to knockdown Fli1, and nontargeting siRNA was used as control (Dharmacon-Horizon Discovery Sciences). TPCA-1 (Bio-Techne-Tocris) was used to inhibit the NFκB pathway, and MLK3 was inhibited using CEP11004 (gift from Cephalon Inc).
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3

Antibody-based Protein Detection Protocol

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The following antibodies were used for immunodetection: M2-anti-FLAG (HRP; Sigma A8592), anti-FLI-1 (Santa-Cruz sc-356X), anti-α-Tubulin (Calbiochem CP06), anti-HA (Abcam ab9110), anti-H3 total (Abcam ab1791), anti-H3K4 me1 (Abcam ab8895), anti-H3K4 me2 (Millipore, 07-030), anti-H3K4 me3 (Active Motif, 39159), anti-H3K9 me1 (Abcam ab9045), anti-H3K9 me2 (Abcam ab1220), anti-H3K9 me3 (Abcam ab8898), anti-HMOX1 (Sigma SAB1410641), anti-Paxillin (BD Transduction Labs 610619), anti-LSD1 (Cell Signaling Technology 2184) AlexaFluor secondary (Molecular Probes), AlexaFluor Phalloidin (Molecular Probes). HCI2509 is previously described (33 (link)).
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4

Protein Extraction and Immunoblotting Protocol

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The cells were lysed using RIPA buffer (Thermo Scientific, Rockford, IL), and total protein in the supernatants was quantified using a BCA protein assay kit (Thermo Scientific, Waltham, MA). Immunoprecipitation (IP) and Western blot analysis were performed as described previously.14 (link) Primary antibodies including anti-p62 (1:500, #sc-101542), anti-LC3 (1:500, #sc-398822), anti-FLI1 (1:500, #sc-22808) and anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (1: 1000, #sc-32233) were bought from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA), anti-TRIM3 (1:1000, #ab111840), anti-Beclin1 (1:1000, #ab207612), anti-Myc (1: 1000, #ab32), anti-Flag (1:1000, #ab49763) and anti-HA (1:1000, #ab9110) were obtained from Abcam (Abcam, Cambridge, USA).
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5

Western Blot Analysis of FLI-1 Protein

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Cells were lysed in RIPA buffer. Cellular proteins were collected and subjected to 10% SDS-PAGE, and transferred onto PVDF membranes (Amersham Pharmacia Biotech, Piscataway, NJ). The membranes were then incubated with specific primary antibodies. Anti-FLI-1 was purchased from Santa Cruz Biotechnology, Inc. Anti-β-ACTIN was purchased from Epitomics, Inc. This was followed by incubation with horseradish peroxidase-conjugated anti-rabbit or anti-mouse IgG antibodies from Santa Cruz Biotechnology, and antigen-antibody complexes were visualized using the Western Bright ECL detection system (Advansta, CA).
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