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47 protocols using lm001 05

1

Cell Culture and Glucose Starvation Protocol

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SNU668, NCI-N87, MKN1, and SNU601 were maintained in Roswell Park Memorial Institute 1640 medium (RPMI1640, LM011-01; Welgene, Korea) containing 10% fetal bovine serum (FBS, 26140-079; Gibco, USA) and 1% antibiotics (LS203-01; Welgene) at 37°C in a humidified 5% CO2 incubator. HEK 293T cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM, LM001-05; Welgene) containing 10% FBS and 1% antibiotics at 37°C in a humidified 5% CO2 incubator. Trypsin-EDTA 0.25% (LS015-10; Welgene)was used for cell dissociation. The glucose-deprived medium was prepared by mixing glucose-free DMEM (LM001-56; Welgene) with high glucose DMEM (LM001-05; Welgene) in a 9:1 ratio to make 2.5 mM glucose concentration, followed by the addition of 10% FBS and 1% antibiotics. Complete high glucose DMEM with 25 mM glucose (LM001-05; Welgene) containing 10% FBS and 1% antibiotics was used as a control for the glucose starvation condition. TCID (B1467; APExBIO, USA) and LDN-57444 (S7135; Selleckchem, USA) were dissolved in DMSO and were treated for 24 h in the experiments.
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2

Cultivation and Maintenance of GLUTag Cells

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GLUTag cell line (a well-known murine enteroendocrine L cell line) was kindly provided from Drucker lab. GLUTag were maintained in Dulbecco’s modified Eagle’s medium (DMEM; SH30243.01, Hyclone, LM 001-05, Welgene, Gyeongsan-si, Korea) with 10% fetal bovine serum (FBS; 35-015-CV, Corning at Corning, NY, USA) and 1% penicillin-streptomycin (PS; 15140122, Gibco at Waltham, MA, USA) at 37 °C at 95% humidified air and 5% CO2. Cells were passaged with 0.25% Trypsin-EDTA (25200072, gibco) and seeded on a 100 mm culture dish (353003, Falcon at Waltham, MA, USA). Nutrient-full media were based on DMEM with glucose (LM 001-05, Welgene), 10% FBS, and 1% PS. Nutrient-free media were based on DMEM without glucose (LM 001-56, Welgene) and 1% PS. Nutrient-full and -free media were used to for nutritional stress, including normal, starvation, and replenishment conditions.
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3

Culture and Maintenance of Renal Cell Lines

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Inner medullary collecting duct cells (IMCD cells; CRL-2123™, ATCC, Manassas, VI, USA) were cultured in DMEM/F12 medium (LM002-04, Welgene, Gyeongsan, Korea) containing 10% foetal bovine serum (FBS; 26140-079, Gibco, Waltham, MA, USA), and 1% penicillin-streptomycin (LS 202-02, Welgene). Normal human renal cortical epithelial cells (HRCE; CC-2554, LONZA, Morristown, NJ, USA) were cultured in REGM medium (CC-4190, LONZA) containing 1% penicillin-streptomycin. WT9-7 (CRL-2830™, ATCC), a proximal cortical tubule epithelial cell line isolated from renal cysts from a patient with ADPKD, was cultured in DMEM (LM001-05, Welgene) containing 10% FBS and 1% penicillin-streptomycin in culture dishes coated with type I bovine collagen (#354231, Corning, New York, NY, USA). Human embryonic kidney 293T cells (HEK293T) were cultured in DMEM (LM001-05, Welgene) containing 10% FBS and 1% penicillin-streptomycin in Poly-D-lysine-coated dishes (P7280, Sigma-Aldrich, St. Louis, MO, USA). These cells were grown in a humidified 5% CO2 incubator at 37°C. For hypoxic conditions, cells were incubated in 5% CO2 and 1% O2 balanced with N2 in a hypoxic chamber within an incubator at 37°C.
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4

Hep3B and Raw 264.7 Cell Culture

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All cell culture reagents were purchased from Welgene (Gyungsan, Korea). Hep3B human hepatocyte cancer cell and Raw 264.7 mouse kupffer cell were maintained at 37 °C in a 5% CO2 atmosphere in DMEM (Welgene, LM001–05) supplemented with 5% (vol/vol) fetal bovine serum, penicillin (100 U/mol) and streptomycin (100 μg/ml). For experiments, cells were maintained in a steroid-free condition with phenol free DMEM (Welgene, LM002–05) media containing 2% charcoal dextran treated-FBS, penicillin (100 U/mol) and streptomycin (100 μg/ml). Genistein (LC laboratories, G-6055) and cobalt(II) chloride hexahydrate (Sigma, C8661) were added every 12 h with media change. Lipopolysaccharides (LPS, Sigma, L6511) was added after dissolved in distilled water (100 ng/ml). All cell experiments were repeated at least 3 times.
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5

Fatty Acid Supplementation in H9c2 Cells

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After H9c2 cells were cultured with DMEM-High glucose (LM 001-05, Welgene) added to 5% FBS and 1% P/S, the medium was changed to a low glucose medium (LM 001-17, Welgene), which contained glucose 1000 mg/L, and was added to 2% CD-FBS and 1% P/S, similar to the above starvation medium. Following additional supplementation with fatty acids (Palmitic acid 330 μM, Oleic acid 660 μM), the cells were incubated for 48 h. At 24 h of incubation with the low glucose medium, extra glucose was supplemented to high glucose group cells using 45% D-glucose (LS 001-02, Welgene) to reach glucose concentrations of 4500 mg/L, and incubation was maintained for the remaining 24 h.
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6

In Vitro Cancer Cachexia-Induced Muscle Atrophy

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Primary human normal and type‐2‐diabetic skeletal myoblast (SKM‐D‐F/SKB‐F‐SL; ZenBio), were maintained in skeletal muscle cell growth medium (#SKM‐M; ZenBio) and differentiated into myotubes with differentiation medium (#SKM‐D; ZenBio). C2C12 myoblasts, AD293Tcell line (ATCC). C2C12 myoblast stably expressing PDK4‐FLAG and VXY control were maintained in DMEM high glucose media (#LM001‐05; Welgene). Colon cancer (CT‐26) cells were maintained in RPMI‐1640 media (#SH30027.01; HyClone) supplemented with 10% foetal bovine serum (#SH30084.03; HyClone) and antibiotic‐antimycotic (#15240‐062; Gibco). C2C12 myoblast were differentiated into myotubes with DMEM containing 2% horse serum (Gibco) for 6 days. For in vitro cancer cachexia‐induced muscle atrophy model, the C2C12 myotubes were exposed to conditioned medium (CM). CM is defined as 1:1 ratio of media collected from confluent CT‐26 culture and C2C12 maintenance media.
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7

Culturing Human Keratinocytes from Foreskin

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Human keratinocytes were collected from foreskins obtained during child circumcision in our hospital. Skin specimens were processed and cultured according to the method of Rheinwald and Green13 (link) with some modification, as we mentioned in the previous paper14 (link). Fibroblasts were cultured in Dulbecco's modified Eagle's medium (DMEM, LM001-05; WelGENE, Daegu, Korea) supplemented with 10% fetal bovine serum (FBS; Thermo Scientific HyClone, Logan, UT, USA).
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8

Myogenic Differentiation of C2C12 Cells

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The C2C12 cells (CRL-1772, ATCC®, Manassas, VA, USA) were incubated at 37 °C in 5% CO2. The cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM; LM001-05, Welgene, Gyeongsangbuk-do, Republic of Korea) containing 10% fetal bovine serum (S001-07, Welgene) and 1% ZellShield™ (#13-0150, Minerva-Biolabs, Berlin, Germany). To differentiate C2C12 myoblasts into C2C12 myotubes, the cells were seeded at 2.5 × 105 cells/well in a 6-well plate and cultured at full density for 2 days. The medium was then replaced with a differentiation medium containing 2% horse serum (#16050-122, Thermo Fisher Scientific, Waltham, MA, USA) and 1% ZellShield™ and changed daily for 5 days. To determine the effect of the NNL extract on the DEX-induced cell damage, the differentiated C2C12 myotubes were treated with 100 μM DEX and 50, 100, and 200 μg/mL NNL extract for 24 h.
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9

Culturing Mouse Embryonic Stem Cells

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ES-E14TG2a, a mouse embryonic stem cell line (mESCs), was purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA) and cultured using the same method described elsewhere [29 (link)]. The composition of the growth medium for maintaining undifferentiated cells was as follows: DMEM/F-12 (1:1) (11320-033, Gibco, Grand Island, NY, USA), 10% FBS (16000-044, Gibco, Grand Island, NY, USA), non-essential amino acid (NEAA; 11140-050, Gibco, Grand Island, NY, USA), plasmocin prophylactic (Plas; ant-mpp, InvivoGen, San Diego, CA, USA; 50 μg/mL), 100 U/mL penicillin and 100 mg/mL streptomycin (P/S; L0022, Biowest, Riverside, MO, USA), 2-mercaptoethanol (21985-023, Gibco, Grand Island, NY, USA; 10−4 M), and mouse leukemia inhibitory factor (mLIF; ESG1107, Millipore, Darmstadt, Germany; 10 ng/mL). Mouse embryo fibroblasts (mEFs) were used as the feeder cells. The mEFs were obtained from E10.5 mouse embryos [30 (link)]. The cells were grown at 37 °C in a 5% CO2 humidified tissue culture incubator (MCO-18AIC, Sanyo, Osaka, Japan). The 3T3-L1 cells (Clone A31 and ATCC) for the general toxicity test were cultured in DMEM (LM 001-05, WELGENE, Gyeongsan-si, Gyeongsangbuk-do, South Korea) with 10% fetal bovine serum (FBS; S1480-500, Biowest, Nuaillé, France) and P/S.
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10

Isolation and Culture of Human Hair Follicle Cells

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HEK293T cells (Riken) were cultured in Dulbecco's modified Eagle's medium (DMEM; Caisson) containing 5% fetal bovine serum (FBS; Welgene), l‐glutamine (20 mM), and penicillin‐streptomycin (1%, Thermo Fisher). The isolation of human ORS and DP cells was performed as previous study (Messenger, 1984 (link); Limat & Noser, 1986 (link)). In brief, for ORS cell culture, the bulge region of the dissected human HFs was cutoff to prevent contamination with other cells. The trimmed bulge region was immersed in DMEM (#LM 001‐05, Welgene) supplemented with 20% FBS. On the third day of culture, the medium was changed to Epilife medium (#MEPI500CA, Gibco) supplemented with human keratinocyte growth supplement (#S0015, Gibco). For DP cell culture, the proximal parts of the HF (bulb area) were removed using a needle, and DP was isolated from the tip of hair bulbs. The DPs were immersed in DMEM supplemented with 20% FBS. The explanted DPs were left for 14 days. Then, the medium (DMEM supplemented with 10% FBS) was changed every two days. All cells were cultured at 37°C in a 5% CO2 atmosphere.
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