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20 protocols using o phenanthroline

1

Orai1 Protein Crosslinking Quantification

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Supernatants (21 µl) were mixed with 1 mM CuSO4/1.3 mM o-phenanthroline (final concentration) (Sigma) and incubated 10 min on ice. Reactions were stopped by the addition of an equal volume of quenching solution [50 mM Tris HCl, 20 mM N-ethylmaleimide, 20 mM EDTA, pH 7.4]. Samples were mixed with nonreducing Laemmli’s buffer, heated 15 min at 55°C, and subjected to a 12% SDS PAGE. Separated proteins were transferred to a nitrocellulose membrane and immunoblotted with an antibody recognizing Orai1 (Sigma). Each experiment was performed at least 5 independent times. The quantification of percentage of crosslinking was calculated with the program ImageJ (National Institute of Mental Health).
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2

Antioxidant Potential Evaluation Protocol

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The 2,2-Diphenyl-1-picrylhydrazyl (DPPH), nitro blue tetrazolium (NBT), Streptozotocin, dimethyl-sulfoxide (DMSO ≥99.5%), Gallic acid (ACS reagent, ≥98.0%), Curcumin (Purity≥ 80%), l-Ascorbic acid (Purity 99%), Potassium Phosphate monobasic (Purity ≥99%), Potassium phosphate dibasic (Purity ≥98%), Folin-Ciocalteu reagent, Silver nitrate (analytical grade), O-phenanthroline and ethanol (99%) purchased from Sigma-Aldrich, Co. (St. Louis, USA), were used for this experiment. All chemicals and reagents were of the analytical grade until described otherwise.
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3

Immunomodulatory cytokine assay protocol

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Recombinant human tumor necrosis factor alpha (TNF-α), recombinant human interferon γ (IFN-γ), gentamycin, o-phenanthroline (OF), Griess reagents (1% sulfanilic acid and 0.1% N-(1-naphtyl) ethylenediamine dihydrochloride), Thiazolyl Blue Tetrazolium Bromide (MTT), dimethylformamide (DMF) were from Sigma. Alexa Fluor 488 F(ab)2 fragment of goat anti mouse IgG (H+L) antibody were obtained from Invitrogen. Murine anti-human TNFα monoclonal antibody was purchased from Hycult biotech. DMEM, RPMI-1640, fetal calf serum (FBS) and lymphocyte separation medium (LSM) were obtained from PAA.
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4

Quantitative Assays for Oxidative Stress

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Folin–Ciocalteu’s phenol reagent (cat# 47742); 2,2′-azino-bis(3-ethylbenzthiazoline-6-sulphonic acid) (ABTS) (cat# 10102946001), O-Phenanthroline (cat# 516705) and the Griess reagent (cat# 516705) were purchased from Sigma (St Louis, MO, USA). Griess reagent, ACROS Organics (cat# AC328670500); Sodium persulfate (cat# AC202025000) and 1, 10-Phenanthroline (cat# P69100) were purchased from Fisher Scientific (Pittsburgh, PA, USA). All purchased chemicals were used without further purifications.
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5

Electrochemical Characterization of ALN

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ALN was gifted by the scientific office of Riyadh Pharma (Riyadh, Kingdom of Saudi Arabia). Its purity was evaluated as per the official USP method [30 ] and found to be 99.95%. Acetic acid, o-phosphoric acid, iron (II) ammonium sulfate, boric acid, sodium hydroxide, potassium chloride, ethanol, and tetrahydrofuran (THF) were purchased from Prolabo, France. O-phenanthroline, DOP, NPOE, and DBS were procured from Sigma, Germany. PVC (HMW grade) was purchased from Fluka Chemie, Germany. Carbon electrodes (C-E-02-ELEC) were purchased from American Elements (Orlando, FL, USA). Deionized water was acquired from Aquatron Automotive water still A 4000, Bibby Sterillin Ltd., (Staffordshire, UK). Ferroin (o-phenanthroline-iron (II) complex) was made by mixing 100 mg of o-phenanthroline and 20 mL of 1 × 10−2 M iron (II) ammonium sulfate. A clear solution of ferroin was then obtained by adding water and ethanol dropwise. Britton Robinson buffer (BRB) was prepared by stirring equivalent amounts of acetic acid (0.04 M), boric acid (0.04 M), and o-phosphoric acid (0.04 M). A pH range of 4 to 12 of BRB was prepared by adding 0.2 M sodium hydroxide dropwise [31 ].
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6

Mitochondrial Dynamics Protein Analysis

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Antibodies to the following proteins were used: Drp1 (BD Biosciences), Drp1 S637-PO4 (Cell Signaling), Actin (Millipore), Fis1 (Alexis Corps), Mff (Sigma-Aldrich), Mfn1 (Chen et al., 2003 (link)), Mfn2 (Sigma), Opa1 (in house monoclonal), ClpP (Proteintech Group), Oxa1 (Proteintech Group), Tom20 (Santa Cruz BioTech), Hsp60 (Santa Cruz BioTech), Yme1L (Proteintech Group), Myc (Covance). Oligomycin (Sigma-Aldrich), antimycin A (Sigma-Aldrich), atpenin A5 (Santa Cruz BioTech), CCCP (Sigma-Aldrich) and atractyloside (Sigma-Aldrich) were used at 1 μM. Concentrations of other compounds: rotenone (Sigma-Aldrich), 200 nM; KCN (Sigma-Aldrich), 1 mM; o-phenanthroline (Sigma-Aldrich), 0.5 mM; aspartate, 1 mM; ADP (Sigma-Aldrich), 200 μM; β-NADH (Sigma-Aldrich), 2 mM. Unless otherwise indicated, substrates (pyruvate, malate, succinate, α-ketoglutarate) were used at 5 mM.
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7

Calpain activity imaging in DRG neurons

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Calpain protease activity imaging was performed with CMAC, t-BOC-Leu-Met (Molecular Probes™) in live DRG neurons cultured at 3 DIV. Neurons were incubated in a sequential two-step process with 200 nM of Mitotracker deep red for 15 min at 37°C and 10 μM CMAC, t-BOC-Leu-Met for 15 min at 37°C. Fluorescence (emission 430 nm), corresponding to cleaved t-BOC produced by calpain activity, was monitored in live neuronal imaging using a 40× objective on a Leica TCS SP8 laser-scanning confocal microscope. Confocal imaging settings were kept constant between genotypes and experimental replicates. 2D reconstructions of the stacks were performed with ImageJ (NIH, Bethesda, MD, USA). Cultured neurons were identified by morphological criteria and fluorescence intensity relative to area was measured in neuronal somas with ImageJ. At least 46 neurons were analyzed in three or more independent experiments for each treatment and genotype. For experiments using [Ca2+]cyt modulators, DRG cultures at 2 DIV were treated for 24 h with: (i) extracellular calcium chelator, 1 mM EGTA (Sigma-Aldrich); (ii) intracellular calcium chelator, 20 μM BAPTA-AM (Molecular Probes™); (iii) inhibitor of metal-ion-dependent enzymes, 100 μM o-phenanthroline (Sigma-Aldrich); and (iv) two-fold increase physiological extracellular calcium, 3.6 mM CaCl2.
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8

Mitochondrial Dysfunction Assay Protocol

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CCCP (C2759, Sigma), Puromycin (P8833, Sigma), MitoBloCK-6 (5.05759.0001, EMD Millipore), MitoBloCK-10 (HY-115467, MedChemExpress), FuGENE HD Transfection Reagent (E2311, Promega), Oligomycin A (75351, Sigma), Antimycin A (A8674, Sigma), MG132 (1748, Tocris), o-phenanthroline (516705, Sigma), AEBSF (A8456, Sigma), TMRE (T669, Thermo Fisher Scientific) and trans-Resveratrol (70675-50, Cederlane).
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9

Biochemicals and Reagents Procurement

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Methanol, n‐Hexane, petroleum ether, ethyl acetate, Bouin's fluid, formalin, DPPH, O‐phenanthroline, potassium ferricyanide, tri‐chloroacetic acid, EDTA, and sodium dihydrogen phosphate were procured from Sigma‐Aldrich (St. Louis, USA). Diazepam and Fluoxetine hydrochloride were purchased from Square Pharmaceutical Ltd. (Dhaka, Bangladesh). Tween‐80 was obtained from Scharlab (Sentmenat, Barcelona, Spain). Aluminum chloride, Folin–Ciocalteu reagent, potassium acetate, sodium carbonate, gallic acid, isopropyl alcohol, ferric chloride, ferrous sulfate, sodium salicylate, hydrogen peroxide, and quercetin were bought from Merck (Darmstadt, Germany).
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10

Reticulocyte Iron Quantification Protocol

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Mice were injected intraperitoneally with 100 mg/kg phenylhydrazine (PHZ, Sigma). Blood was collected in 3 days after PHZ treatment and stained with FITC-anti-CD71 and PE-anti-Ter119 (Biolegend) for sorting Ter119+CD71high reticulocytes. The sorted cells were cultured in Iscove’s Modified Dulbecco Medium (IMDM, Gibco) supplemented with 30% fetal bovine serum (Hyclone), 1% deionized bovine albumin (Sigma), 100 units/ml penicillin (Gibco), 100 g/ml streptomycin (Sigma) and 0.1 mM α-thioglycerol (Sigma) [15 (link)]. In some experiments, 10 μM carbonyl cyanide p-trifluoromethoxyphenylhydrazone (FCCP), 0.1 μM wortmannin, 5 αM N-acetyl-l-cysteine (NAC), 5 mU/ml glucose oxidase (GO), or 1 αM o-phenanthroline (Sigma) was also added to the culture. For iron quantification, 1 × 107 cells were collected from the cultures on indicated days and lysed by NP-40 lysis buffer (1% NP-40, 150 mM NaCl, 50 mM Tris-HCl, pH 7.4). The concentration of Fe2+ and Fe3+ were determined by QuantiChrom Iron Assay Kit (BioAssay Systems) per the manufacturer’ s protocol.
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