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11 protocols using nci h1299

1

Characterization of NSCLC Cell Lines

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Non-cancerous, immortalized human lung bronchial epithelial cell line BEAS-2B was purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). Normal fetal lung fibroblast cell HFL1; human LUAD cell lines Calu-3, NCI-H1975, and NCI-H1395; LUSC line NCI-H520; and other NSCLC cell lines A549 and NCI-H1299 were purchased from Procell (Wuhan, China). LUSC lines NCI-H226 and SK-MES-1 were purchased from Shanghai Chinese Academy of Science Cell Bank (Shanghai, China). BEAS-2B was grown in Bronchial Epithelial Cell Growth Medium BulletKit (BEGM; Lonza, Basel, Switzerland). HFL1 was cultured in Ham’s F-12K medium (Gibco, Pittsburgh, PA, USA). Calu-3 and SK-MES-1 were cultured in Eagle’s minimum essential medium (MEM; Gibco). NCI-H1975, NCI-H1395, NCI-H1299, NCI-H520, and NCI-H226 were maintained in RPMI-1640 (Gibco). All cell lines, except for BEAS-2B, were supplemented with 10% fetal bovine serum (FBS), streptomycin (100 μg/mL), and penicillin G (100 U/mL; Gibco). All cell lines were authenticated by short tandem repeat (STR) profiling. Cells were incubated at 37°C in a humidified atmosphere with 5% CO2.
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2

Lung Epithelial and LUAD Cell Culture and Analysis

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Human lung epithelial cell line (BEAS-2B Cell Article: No.CL-0496) and LUAD cell lines (NCI-H1299 Cell Article: No.CL-0165, A549 Cell Article: No.CL-0016 and PC9 Cell Article: No.CL-0298) were purchased from Procell Life Science & Technology Co. Ltd. (Wuhan, China) on December 10, 2021. The BEAS-2B and PC9 were cultured in Dulbecco's modified Eagle's medium (DMEM, Gibco). A549 and NCI-H1299 were placed in RPMI 1640 (Gibco). The culture mediums were both supplemented with 10% fetal bovine serum (FBS) and the cells were cultured at 37°C containing 5% CO2. Total RNA was extracted from cell lines via TRIzol reagent (Invitrogen). Evo M-MLV RT Master Mix (Takara) was applied to reverse-transcribed mRNA into cDNA. Quantitative real-time PCR (RT-qPCR) was performed with SYBR Premix Ex Taq II (Takara) on Bio-Rad. The primer sequences of the GAPDH, STARD12 and STARD14 were listed in Supplementary Table 1.
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3

Cell Culture Protocol for NSCLC Cell Lines

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Normal lung epithelial cells (BEAS2B) and NSCLC cell lines A549 and NCI-H1299 were obtained from Procell Life Science & Technology Co., Ltd. A549 and NCI-H1299 cells were maintained in complete medium consisting of DMEM (Thermo Fisher Scientific), 0.1% penicillin‒streptomycin, and 10% fetal bovine serum (FBS, Thermo Fisher Scientific, category number: 26010-074) at 37°C in a humidified atmosphere of 5% CO2. Cells were maintained in a 75 cm2 culture flask for culture. Cells were subcultured every 3 days with a maximum of passages not exceeding 25. When the cells grew to 70% confluence, they were collected and used for subsequent experiments.
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4

Transfection of Circular RNA in Lung Cancer Cells

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Human bronchial epithelial cells (HBE) were obtained from FUHENG Biology (Shanghai, China). PLA-801D, NCI-H1299, HCC827, NCI-H1437 and NCI-H446 cells (Procell, Wuhan, China) were maintained in RPMI-1640 (Gibco, Grand Island, NY, USA) containing 10% fetal bovine serum (FBS) (Hyclone, Logan, UT, USA). A549 cells (Procell) were grown in Ham's F-12K medium (Procell) containing 10% FBS. HEK-293T cells (Zhongqiaoxinzhou, Shanghai, China) were maintained in DMEM (Gibco) containing 10% FBS. All cells were cultured in a humidified atmosphere with 5% CO2 at 37°C.
For transfection, circ_0089823 siRNAs (si-circ_0089823) and their negative control (si-NC), circ_0089823 shRNA (sh-circ_0089823) and its negative control (sh-NC) were transfected into A549 cells, while circ_0089823 over-expression plasmid (OE-circ_0089823) and its negative control (vector) were transfected into PLA-801D cells using Lipofectamine 2000 Reagent (Invitrogen, Carlsbad, CA, USA) according to the protocol. Similarly, microRNA mimics, inhibitors and their negative controls (mimics NC and inhibitor NC) were transfected into A549 cell and PLA-801D cells using Lipofectamine 2000 Reagent. Cells transfected with sh-circ_0089823, sh-NC, OE-circ_0089823 or vector were selected with G418 (350–400 μg/ml; Solarbio, Beijing, China) to obtain stably transfected cell clones.
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5

Lung Adenocarcinoma Tissue and Cell Line Protocol

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This study includes five pairs of lung adenocarcinoma (LUAD) tissues from Space Central Hospital. The ethical approval for this study was from Space Central Hospital (20,200,511-JJJHZ-01). Written informed consents were obtained from each patient. Four NSCLC cell lines (A549, NCI-H1299, HCC827, and NCI-H1975) and human bronchial epithelial cell line HBEC were obtained from Procell Life Science&Technology Co.,Ltd (Wuhan, China). A549 cells were cultured in DMEM (High glucose, Gibco, Grand Island, NY, USA, 11,965–092) with 10% FBS (Gibco) and 1% penicillin/streptomycin (P/S, Procell). NCI-H1299, HCC827, and NCI-H1975 cells were cultured in RPMI-1640 medium (Gibco) with 10% FBS (Gibco) and 1% penicillin/streptomycin (P/S, Procell). HBEC cells were cultured in the bronchial epithelial growth medium (BEGM, Lonza, CC-3170). All the cells were cultured at 37 °C in a 5% CO2 incubator.
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6

RPL11 Overexpression and Knockdown in Lung Cancer Cell Lines

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NCI-H1299 and NCI-H1650 cell lines were purchased from Procell Life Science and Technology Co (Wuhan, China), whereas HBE, A549, and HCC827 cell lines were gifted by the Key Laboratory of Environment and Genes Related to Diseases of Xi’an Jiaotong University. NCI-H1299, NCI-H1650, HCC827, and HBE cells were cultured in RPMI-1640 medium (Biological Industries, Beit Haemek, Israel) containing 10% fetal bovine serum (FBS, Biological Industries, Beit Haemek, Israel), A549 cells were cultured in F-12 K medium (Hyclone, Thermo Co., USA) supplemented with 10% FBS. All cells were cultured in a humidified incubator at 37 ℃ with 5% CO2.
For vector and small interference RNAs (siRNA) transfection, jetPRIME reagent (polyplus-transfection SA) was used according to the manufacturer’s instructions. RPL11 overexpression vector were constructed by inserting the flag-conjugated RPL11 sequence into the GV141 vector. siRNA fragments of RPL11 (siRPL11) were synthesized by GenePharma (Shanghai, China). The siRPL11 sequences are si-1: Sense, 5’-GUAUGAUGGGAUCAUCCUU-3’, Antisense, 5’-AAGGAUGAUCCCAUCAUAC-3’; si-2: Sense, 5’-GCTUAGAUACACUGUCAGAU-3’, Antisense, 5’-AUCUGACAGUGUAUCUAGC-3’; si-3: Sense, 5’-GGUGCGGGAGUAUGAGUUA-3’, Antisense, 5’-UAACUCAUACUCCCGCACC-3’. The negative control siRNA (si-nc) sequences are Sense, 5’-UUCUCCGAACGUGUCACGU-3’, Antisense, 5’-ACGUGACACGUUCGGAGAA-3’.
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7

Circular RNA Knockdown in Lung Cancer Cells

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All cell lines (A549, NCI-H1299, HCC827 and 16HBE) were purchased from Procell Life Science & Technology Co., Ltd. (Wuhan, China) and confirmed by short tandem repeat (STR) profiling. HCC827 is a LUAD cell line with an acquired mutation in the EGFR tyrosine kinase domain (E746-A750 deletion), and 16HBE is a human bronchial epithelial cell line. The A549, NCI-H1299 and HCC827 cells were cultured in RPMI-1640 medium (Gibco, Invitrogen, Carlsbad, CA), and the 16HBE cells were cultured in DMEM (Gibco) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin. All cell lines were grown in humidified air at 37 °C with 5% CO2. The siRNA (si-hsa_circ_0005962, 5′-GAGACAACUUGACAUCUCUTT-3′) targeting the back-splice junction of hsa_circ_0005962 was synthesized by GenePharma (Shanghai, China). The A549 and H1299 cells were transfected with the siRNA using the Lipofectamine® 2000 Reagent (Invitrogen) according to the manufacturer’s instructions. After transfection, the cells were processed to assess the knockdown activity by qRT-PCR or used for other experiments.
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8

Cell Line Culture Conditions

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A549 and NCI-H460 cells were obtained from KeyGEN Bio TECH Corp., Ltd (Jiangsu, China). NCI-H1299 cells were obtained from Procell Life Science and Technology Co., Ltd (Hubei, China). A549 cells were cultivated within DMEM and F12 medium (Gibco, US), while NCI-H460 and NCI-H1299 cells were cultured within the RPMI 1640 medium (Gibco, US). 10% fetal bovine serum (FBS, Gibco, USA) and 100 U/ml penicillin-streptomycin mixed antibiotics were added into each medium. Each cell line was kept under 37°C in a humidified 5% CO2 atmosphere.
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9

Culturing NSCLC and Normal Lung Cells

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The human NSCLC cell lines A549, NCI‐H1299, HCC827, NCI‐1650 and NCI‐H358 were procured from the National Collection of Authenticated Cell Cultures (Shanghai, China), and the human normal lung epithelial cell line DEAS‐2B was provided by Beyotime. A549 cells were cultured in DMEM/F12 medium (Procell) containing 10% fetal bovine serum (FBS, Gibco). BEAS‐2B, NCI‐H1299, HCC827, NCI‐1650 and NCI‐H358 cells were cultured in RPMI 1640 medium (Procell) containing 1% glutamax (Invitrogen), 1% (v/v) 100 mM sodium pyruvate solution (Invitrogen) and 10% FBS. All cells were maintained in a humidified chamber supplemented with 5% CO2.
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10

Cancer Cell Lines Cultivation Protocol

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The lung cancer cell lines (A549 and NCI-H1299), hepatoma cell lines (Hep3B, Huh7, HepG2 and HCCLM3), bladder cancer cell lines (UMUC-3 and T24), colorectal cancer cell lines (T84, LoVo and SW480) and pancreatic cancer cell lines (CFPAC-1 and PANC-1) were purchased from Procell Life Science & Technology Co., Ltd. The tongue squamous cell carcinoma cell lines (HN3, HN4), hepatoma cell line (SNU-449), melanoma cell line (WM35), cervix carcinoma cell line (Hela), epithelial carcinoma cell line (A431), breast cancer cell line (MCF7) and HEK293 cell were maintained by our laboratory. Cell lines were authenticated using short tandem repeat (STR) profiling. MCF7 cells were cultured in Dulbecco's modified Eagle's medium (DMEM; Gibco; Thermo Fisher Scientific, Inc.) containing 10% fetal bovine serum (FBS) and 1X penicillin/streptomycin and all cells were incubated at 37°C in a humidified 5% CO2 incubator.
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