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23 protocols using bcl2 associated x (bax)

1

Molecular Mechanisms of Autophagy Regulation

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Cell culture reagents were purchased from Invitrogen. Human insulin-like growth factor 1 (hIGF-1) was purchased from Cell Signaling Technology (Boston, MA, USA). Chloroquine and U0126 were from Promega Corporation (Madison, WI, USA). The MG132 was from Sigma-Aldrich (Louis, MO, USA). Lambda protein phosphatase (λ-PP) was from New England BioLabs Inc. (Ipswich, MA, USA). The following antibodies were used throughout whole study. Rabbit polyclonal antibody β-Actin (P30002, Abmart, China), rabbit polyclonal antibody LC3 (L7543, Sigma, USA), rabbit monoclonal antibody Bim (2933, Cell Signaling Technology, USA), rabbit polyclonal antibody phosphorylated ERK1/2 (9101, Cell Signaling Technology, USA), rabbit polyclonal antibody native ERK1/2 (9102, Cell Signaling Technology, USA), rabbit polyclonal antibody Beclin1 (B6061, sigma, USA), rabbit polyclonal antibody Bcl-2 (2870, Cell Signaling Technology, USA), and rabbit polyclonal antibody Bax (AF0057, Beyotime, China), as well as goat anti-rabbit second antibody, HRP (31460, Thermo Fisher Scientific, USA). All other chemicals were purchased from Sigma-Aldrich, unless otherwise stated.
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2

Baicalein Modulates Signaling Pathways

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BxPC-3 and PANC-1 cells treated with Baicalein, inhibitors, or siRNAs were lysed in the RIPA buffer (Beyotime Biotechnology). The concentrations of the total proteins were measured using the Bicinchoninic acid (BCA) method (Beyotime Biotechnology). Protein samples (20 μg) were subjected to SDS-PAGE and transferred to nitrocellulose membranes by electroblotting. The membranes were incubated with the primary antibodies and then the corresponding secondary antibodies (horseradish peroxidase-conjugated goat anti-Rabbit IgG or goat anti-mouse IgG at 1:1000 dilution, Beyotime Biotechnology). The signals were detected using Super ECL Detection Reagent (High-sig ECL Western Blotting Substrate, 180-5001, Tanon, Shanghai, China). Primary antibodies used: NEDD9 (#4044, 1:500), Akt (#4691, 1:1000), p-Akt S-473 (#4060, 1:1000), p-Akt T-308 (#2965, 1:1000), ERK1/2 (#9102, 1:1000), p-ERK1/2 (#9101, 1:1000), PDK1(#3062, 1:1000), P21(#8831, 1:1000), P27(#3686, 1:1000) and cleaved caspase-9 (#7237, 1:1000) from Cell Signaling Technology Inc. (Danvers, MA, USA), Bax (AB026, 1:1000) and Bcl-2 (AB112, 1:1000) from Beyotime Biotechnology (Shanghai, China).
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3

Protein Extraction and Western Blot Analysis

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We used Ishikawa and SNGM cells during the logarithmic growth period to extract total proteins, and protein content determined by BCA Protein Quantification Kit. Take a protein sample and heat it at 100 °C for 3 min to make the protein fully denatured. After separating the mixed protein sample by using polypropylene gel (10% separation gel, 5% concentrated gel), it was placed onto a polyvinylidene difluoride (PVDF) membrane and sealed with 5% skim milk powder (2.5 g non-fat powdered milk + 50 ml Tris-buffered saline with Tween 20). Incubate these membranes with antibodies at 4 °C for 12–16 h: KIF23 (1:2000; Affinity), p-ERK (1:1000; Beyotime), ERK (1:1000; Beyotime), p-AKT (1:1000; ABclonal), AKT (1:5000; ABclonal), p-PI3K (1:1000; ABclonal), PI3K (1:2000; Bioworld), BCL-2 (1:1000; Beyotime), BAX (1:1000; Beyotime), Caspase-3 (1:1000; Abmart), and GAPDH (1:1000; Beyotime). Subsequently, the sample was coupled with peroxidase-coupled anti-rabbit IgG antibody (1:5000; Beyotime, China) for 2 h under room temperature. ECL enhanced chemiluminescence kit (BOSTER, USA) Using a supersensitive ECL chemiluminescence ready-to-use substrate (BOSTER, USA) to visualize the strip on the Bio-RAD machine.
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4

Eudesmin Cytotoxicity Evaluation Protocol

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Eudesmin (purity >98%) was obtained from Chengdu Herbperity Co., Ltd (Chengdu, China). 1-(4,5-Dimethylthiazol-2-yl)-3,5-diphenyl-formazan (MTT) was purchased from Sigma-Aldrich (St. Louis, MO). The primary monoclonal antibodies of P53, Bcl-2, Bax, caspase-9, caspase-3, Akt, JNK and horseradish peroxidase-conjugated secondary antibodies were obtained from Beyotime Biotechnology (Shanghai, China). RPMI1640 culture medium and foetal bovine serum (FBS) were purchased from American Hyclone Company (Logan, UT). All other chemicals and reagents used in this study were of analytical grade.
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5

Western Blot Analysis of Apoptosis Markers

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The MSCs were seeded into a 60 mm petri dish, at a density of 10×105 cells/dish. The total protein was extracted using radioimmunoprecipitation buffer (EMD Millipore), supplemented with PMSF. The cells were sonicated briefly and centrifuged at 10,000 x g at 4°C. The protein concentration was measured using the BCA Protein Assay kit, according to the manufacturer's instructions. Equal samples of protein (20 µg) were separated by 12% SDS-PAGE and then transferred onto polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA). The membranes were incubated with blocking solution (Beyotime Institute of Biotechnology, Jiangsu, China) at room temperature for 2 h, and then incubated with the following primary antibodies: Bcl-2, Bax, caspase-3 and GAPDH (cat. no. KC-5G5; KangChen Biotech, Shanghai, China; dilution, 1:10,000) at 4°C overnight. The membranes were then incubated for 1 h at room temperature with the appropriate horseradish peroxidase conjugated-secondary antibodies. The blots were visualized using an enhanced chemiluminescence solution (EMD Millipore) and were exposed to X-ray film (Kodak, Tokyo, Japan). The density of the protein bands was analyzed using ImageJ 1.41 software (National Institutes of Health, Bethesda, MD, USA). The expression levels of the target proteins were normalized to those of GAPDH.
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6

Quantitative Western Blot Analysis of Apoptosis Proteins

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Total proteins were extracted from cells a using RIPA buffer (Beyotime, Shanghai, China). Then, protein samples (30 μg per lane) were separated on 10% SDS-PAGE gels (Bio-Rad, USA) and transferred to a PVDF membrane (Millipore, USA). Sealed with PBS buffer containing 5% skim milk powder for 2 h, and added anti-Bcl-2 (1: 1000, Beyotime, Shanghai, China), anti-Bax (1∶2000, Beyotime, Shanghai, China), anti-cleaved caspase3 (1∶2000, Beyotime, Shanghai, China), anti-GAPDH (1∶2000, Beyotime, Shanghai, China) overnight at 4 °C, the PBST buffer was rinsed 3 times, 5 min each time. Next, Bcl-2, Bax, cleaved caspase3 and GAPDH secondary antibodies (sheep versus rabbit, Beyotime, Shanghai, China) were added, and incubated at 37 °C for 4 h. PBST buffer was rinsed for 3 times, and the gray value of target protein was analyzed by Image J.
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7

IFN-γ and TNF-α Modulate Apoptotic Signaling

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NIT-1 cells were seeded at 3 × 105 cells/well in 6-well plates and treated with IFN-γ or TNF-α alone or a combination of IFN-γ and TNF-α for indicated times. In some experiments, cells were pretreated with 100 μM STAT1 inhibitor, fludarabine, for 1 h and then treated with IFN-γ and TNF-α for indicated times. At the end of the culture time, both the floating cells and attached cells were harvested. Monoclonal antibodies against cleaved caspase-3 (Cell Signaling), caspase-3 (Cell Signaling), caspase-9 (Beyotime Institute of Biotechnology), Stat-1 (Cell Signaling), phospho-Stat1 (Tyr701) (Cell Signaling), Stat-3 (Cell Signaling), Phospho-Stat3 (Cell Signaling), Bcl-2 (Abcam), Bax (Beyotime Institute of Biotechnology), cytochrome c (Cell Signaling), and COX4 (BD Biosciences) were used to analyze the expression of the respective proteins by western blotting as previously described [13 (link)]. Protein levels were calculated relative to that of β-actin (Beyotime Institute of Biotechnology).
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8

Western Blot Analysis of Cardiac Markers

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The heart tissue and H9C2 cells were ground and lysed by protein lysis buffer (Beyotime, China) with PMSF and phosphatase inhibitor cocktail. Total protein samples were extracted from the lysate, and the protein concentration was detected. The sample was loaded into 8% or 12% SDS-PAGE gel for electrophoresis and then transferred to the PVDF membrane. It was blocked for 1 hour and then immersed in primary antibody for 12 hours at 4°C, such as GAPDH (Proteintech, 60004-1-Ig, USA), GSDMD (Abcam, ab219800, ab209845, UK), NLRP3 (Abcam, ab214185, UK), caspase-1 (Abcam, ab179515, UK), IL-1β (Abcam, ab9722, UK), caspase-3 (Cell Signaling Technology, 14220T, USA), caspase-7 (Cell Signaling Technology, 12827T), caspase-8 (Beyotime, AC056, China), Bcl-2 (Beyotime, AB112, China), Bax (Beyotime, AB026, China), PARP-1 (Cell Signaling Technology, 9532S, USA), and poly/mono-ADP ribose (Cell Signaling Technology, 83732S, USA). The membranes were washed with TBST twice, immersed in the secondary antibody for 1 hour, and then washed again. Bands were displayed by the ECL detection kit (Millipore, USA).
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9

Western Blot Analysis of Protein Expression

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Protein extracts were resolved on sodium dodecyl sulfate–polyacrylamide gels and transferred to polyvinylidene difluoride membrane. The membrane was blocked with 5% freshly prepared milk-tris buffered saline Tween 20 for 2 h at room temperature and then incubated overnight at 4°C with antibodies specific for β-actin (Abcam, Cambridge, MA),HO-1, Bax, Bcl-2 (Beyotime), ERK1/2 and pERK1/2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Signals were detected with horseradish peroxidase–labelled secondary antibodies by chemiluminescence labelling.
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10

Protein Expression Analysis by Western Blot

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Protein extraction and western blotting were performed as described previously.17 (link)
Briefly, proteins were isolated by RIPA lysis buffer (Beyotime, China).
Then 24 μg protein was loaded and separated by 12% SDS-polyacrylamide gel
electrophoresis and transferred onto a polyvinylidene difluoride membrane and
incubated with antibodies: bax (#2774), bcl-2 (#3498), cleaved caspase-3
(#9661), cleaved caspase-8 (#8592), cleaved-PARP (#5625), p21 (#2947), p27
(#3686s), CDK1 (#4539), E-cadherin (#14472), PI3K (#17366), AKT (#4691), Erk
(#4370), JNK1 (#4668), mTOR (#2983), and GAPDH (#51332). These antibodies were
purchased from Cell Signaling Technology. MMP2 (sc-13595) and MMP9 (sc-21736)
were purchased from Santa and MCP-1 (66272-1-lg) was purchased from Proteintech.
The chemiluminescence signals were detected with an Amersham Imager 600 (GE,
USA).
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