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Alexa fluor 594 goat anti rat

Manufactured by Thermo Fisher Scientific
Sourced in United States

Alexa Fluor 594 goat anti-rat is a fluorescently labeled secondary antibody used in immunoassays and other fluorescence-based applications. It binds to rat primary antibodies and can be detected using fluorescence microscopy or flow cytometry.

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21 protocols using alexa fluor 594 goat anti rat

1

Immunofluorescence Analysis of Lymphoid Cells

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CLN from PBS-perfused mice were snap-frozen in Tissue-Tek OCT compound (Sakura Finetex, Torrance, CA) and sectioned at 10 μm using a Thermo Shandon cryostat. Sections were fixed with ice cold 70% acetone for 5 min, blocked with 5% bovine serum albumin and 10% goat serum for 1 h and then stained with rat anti-mouse FITC conjugated GL7 mAb (BD Biosciences), rat anti-mouse B220 mAb (BD biosciences) and rabbit anti-mouse CD3 polyclonal Ab (Abcam, Cambridge, MA) overnight at 4 °C. Samples were then incubated with secondary Ab using Alexa Fluor 594 goat anti-rat (Life Technologies, Grand Island, NY) and Cy5 goat anti-rabbit (Life Technologies, Grand Island, NY) Ab for 1 h at room temperature. Sections were mounted with ProLong Gold antifade reagent with 4′,6-diamidino-2-phenylindole (DAPI) (Life Technologies, Grand Island, NY) and examined using a Leica TCS SP5 II fluorescence microscope (Lawrenceville, GA).
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2

Immunophenotyping of Tumor-Infiltrating Immune Cells

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Frozen sections of resected tumors were cut into 8‐μm serial slices. Slices were fixed in 4% paraformaldehyde for 5 min at room temperature, followed by serum‐free blocking protein (Dako). Samples were subsequently stained with primary antibodies, such as anti‐CD4 (1:50; BD Pharmingen), anti‐CD8 (1:150; BD Pharmingen), anti‐PD‐1 (1:100; Abcam), anti‐Foxp3 (1:400; Novus Biologicals) and anti‐dendritic cell marker which reacts with dendritic cell inhibitory receptor 2 (1:50; Novus Biologicals), and anti‐Gr‐1 (1:100; BD Pharmingen) antibodies overnight at 4°C. After washing, fluorescence‐labeled secondary antibodies (Alexa Fluor 594 goat anti‐rat, Alexa Fluor 488 goat anti‐rabbit and Alexa Fluor 488 donkey anti‐goat IgG H + L [1:250, Life Technologies]) were then applied to the sections for 30 min at room temperature. DAPI (Vector Laboratory) was used for nuclear staining. Stained slides were finally imaged using an Olympus BX61 scanning fluorescence microscope. For quantification data, counting was performed in three random fields at ×200 magnification per tumor tissue specimen.
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3

Cryosectioning and Immunofluorescent Staining

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CLN from PBS-perfused mice were snap-frozen in Tissue-Tek OCT compound (Sakura Finetex, Torrance, CA) and sectioned at 10 μm using a Thermo Shandon cryostat. Sections were fixed with ice cold 70% acetone for 5 min, blocked with 5% bovine serum albumin and 10% goat serum for 1 hr and then stained with rat anti-mouse FITC conjugated GL7 mAb (BD Biosciences), rat anti-mouse B220 mAb (BD biosciences) and rabbit anti-mouse CD3 polyclonal Ab (Abcam, Cambridge, MA) overnight at 4°C. Samples were then incubated with secondary Ab using Alexa Fluor 594 goat anti-rat (Life Technologies, Grand Island, NY) and Cy5 goat anti-rabbit (Life Technologies, Grand Island, NY) Ab for 1 hr at room temperature. Sections were mounted with ProLong Gold antifade reagent with 4′,6-diamidino-2-phenylindole (DAPI) (Life Technologies, Grand Island, NY) and examined using a Leica TCS SP5 II fluorescence microscope (Lawrenceville, GA).
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4

Immunocytochemical Staining of Activated Retinal Microglia

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Activated retinal microglia (using H2O2) were washed with PBS, fixed in 2% paraformaldehyde for 15 min and then washed again with PBS. Fixed cells were permeabilized in 0.1% Triton X-100 (20 min) and blocked in 10% normal goat serum containing 1% BSA (1 h). Cells were incubated in rabbit Iba-1 (1:500, Wako, Richmond, VA) and rat CD68 (1:100, ABD Serotec, Raleigh, NC) primary antibodies overnight at 4 °C, followed by incubation in secondary antibodies, Alexa-Fluor 488 goat anti-rabbit and Alexa-Fluor 594 goat anti-rat (1:500, Life Technologies, Carlsbad, CA).
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5

Characterizing Human Muscle Satellite Cells

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Human muscle satellite cells (hMuSCs; ScienCell Inc., Carlsbad, CA, USA) were cultured in growth media (DMEM containing 10% FBS, 10% HS, 0.5% chick embryo extract (CEE; MP Biomedicals, Santa Ana, CA, USA), and 1% P/S). On the day of cell seeding, hMuSCs were trypsinized and resuspended in low‐serum medium (DMEM containing 10% FBS and 1% P/S) at a concentration of 3 × 106 per mL, and seeded onto the muscle matrix derived from decellularized gastrocnemius muscles. After 3 or 7 days, hMuSC‐ECM cultures were fixed in 2% PFA for 20 min and transferred to 30% sucrose solution for 24 h. The fixed tissues were then snap‐frozen in liquid nitrogen‐cooled 2‐methylbutane. Samples were then cryosectioned (7 μm) and mounted on glass slides. Sections were incubated overnight with either rat anti‐Er‐Tr7 antibody (1:500; Hycult, Plymouth Meeting, PA, USA) or rabbit anti‐desmin antibody (1:1000; Abcam, Cambridge, MA, USA), followed by a 45‐min incubation with AlexaFluor 594 goat anti‐rat or AlexaFluor 488 goat anti‐rabbit secondary antibodies (1:1000; Life Technologies).
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6

Immunohistochemical Analysis of mCherry and TH

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These procedures were carried as described previously28 (link). Primary antibodies used were rat monoclonal mCherry (1:2000, Thermo Fisher, M11217); mouse monoclonal TH (1:2000, Sigma, T2928); secondary antibodies were Alexa Fluor 488 goat anti-mouse (1:1000, Invitrogen Molecular Probes, A11001), Alexa Fluor 594 goat anti-rat (1:1000, Invitrogen Molecular Probes, A11007). Slices were mounted on slides, embedded in Mowiol (with 4,6-diamidino-2-phenylindole), cover-slipped, and analyzed using an upright fluorescent microscope (Nikon Eclipse 80i, Nikon).
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7

Immunofluorescence Staining of mCherry and TH

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These procedures were carried as described previously [28 (link)]. Primary antibodies used were rat monoclonal mCherry (1:2000, Thermo Fisher, M11217); mouse monoclonal TH (1:2000, Sigma, T2928); secondary antibodies were Alexa Fluor 488 goat anti-mouse (1:1000, Invitrogen Molecular Probes, A11001), Alexa Fluor 594 goat anti-rat (1:1000, Invitrogen Molecular Probes, A11007). Slices were mounted on slides, embedded in Mowiol (with 4,6-diamidino-2-phenylindole), cover-slipped, and analyzed using an upright fluorescent microscope (Nikon Eclipse 80i, Nikon).
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8

Immunofluorescent Staining of Chemokines

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AT samples were fixed and mounted in paraffin and sectioned into 5 μm slides with a microtome (Leica Biosystems, Nussloch, Germany). Antigen was unmasked with proteinase K (cat#S3020, Dako, Santa Clara, CA) and blocked with 15% horse serum for 1 h. Samples were incubated with the following primary antibodies overnight at 4°C: mouse anti-human CCL17 (1:50, cat#DY364-05, R&D Systems), mouse anti-human CCL22 (1:50, cat#DY336, R&D Systems), goat anti-human CCR4 (1:100, ab1669; Abcam, Cambridge, UK), rabbit anti-human CD3 (1:100, cat#C7930, Sigma-Aldrich, St. Louis, MO), rabbit polyclonal anti-human CD31 (1:50, cat#ab32457, Abcam) and rat anti-human Mac-3 (1:100, cat#sc19991, Santa Cruz Biotechnology, Dallas, TX). Alexa-Fluor® 488 goat anti-rabbit (cat#A11034), Alexa-Fluor® 488 donkey anti-rat (cat#A21208), Alexa-Fluor® 594 goat anti-rat (cat#A1107), Alexa-Fluor® 594 goat anti-mouse (cat#A1105) and Alexa-Fluor® 594 chicken anti-goat (cat#A21468) antibodies were used as secondary antibodies (dilution 1:1000; all from Molecular Probes, Eugene, OR). Nuclei were stained with Hoechst (1:4000). Afterwards, five fields from each section were captured with a Zeiss Axio Observer A1 fluorescence microscope (Carl Zeiss Micro Imaging GmbH, Oberkochen, Germany).
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9

Immunohistological Validation of Viral Expression in Mice

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The viral expression in the injected mice was immunohistologically validated. Mice were transcardially perfused with PBS, pH 7.4. The brains were removed and fixed overnight in 4% PFA. One hundred μm of free-floating slices were permeabilized in 0.5% Triton X-100 for 1 hr. Subsequently, slices were incubated with a mCherry antibody (1:10,000, rat serum, Thermo Fisher Scientific, M11217) in a blocking reagent (4% normal goat serum, 0.4% Triton 1%, and 4% BSA in PBS) over night at room temperature. After washing the samples three times with PBS, a secondary antibody was administered (Alexa Fluor 594 goat anti-rat, 1:400, Invitrogen, A11007) in 5% normal goat serum/BSA and incubated for 2 hr at room temperature. During the last 30 min of incubation, Nissl staining was carried out (Invitrogen, N21473, 1:200). Afterward slices were washed three times with PBS, mounted with Dako Mounting Medium, and covered with a glass cover-slip. Alternatively, a NeuN staining was performed to visualize neurons in the hippocampus using a NeuN primary antibody (1:1000, MABN140, rabbit, Sigma-Aldrich, secondary Alexa Fluor 405 goat anti-rabbit, A31556, 1:400on).
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10

Immunostaining of Cochlear Samples

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For cochlear samples, P3 temporal bones (n = 1 for the WT, n = 2 for the mutant) were dissected and fixed at room temperature for 2 h or at 4°C overnight and then decalcified overnight at 4°C in a solution of 10% EDTA/PBS. The samples were then embedded in sucrose/gelatin, as described elsewhere (Mansour et al., 2013 (link)). Sections (thickness: 14 µm) prepared in the modiolar plane were stained with the following primary antibodies: rat anti-CD44 (550538; 1:1,000; BD Biosciences), rabbit anti-MYO7A (25-6790; 1:1,000; Proteus Biosciences), rabbit anti-p75NTR (#07-476; 1:650; Millipore), or goat anti-PROX1 (AF2727; 1:200; R&D Systems). The secondary antibodies were Alexa Fluor 594 goat anti-rat (A11007; 1:400; Invitrogen), Alexa Fluor 488 goat anti-rabbit (A11034; 1:400; Invitrogen), or Alexa Fluor 488 donkey anti-goat (A11055; 1:400; Invitrogen). DAPI was included in the mounting medium (Vectashield; Vector Labs).
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