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13 protocols using cd25 percp cy5

1

Multiparameter Flow Cytometry of Immune Cells

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Cells were stained with the following antibodies for analysis CD3-FITC (35–0031, Tonbo Bioscience), CD8-BV711 (100748, BioLegend), CD4-BV650 (100546, BioLegend), CD45-BUV395 (565967, BD Biosciences), CD90-BV785 (105331, BioLegend), CD11c-APC (20–0114, Tonbo Biosciences), MHC-II-Pac Blue (107620, BioLegend), CD103-PercPCy5.5 (121416, BioLegend), CD11b-A700 (557960, BD PharMingen), EpCAM-PercPe710 (46–5791-82, eBioscience), Ly51-PE (12–5891-83, eBioscience), CD31-PECy7 (25–0311-82, eBioscience), CD140a-APC (135907, BioLegend), UEA1-FITC (FL-1061, Vector Laboratories), TCRbeta-PECy7 (109222, BioLegend), CD62L-APC-Cy7 (104427, BioLegend), CD44-Alexa Fluor RTM700 (56–0441-82, BioLegend), CD25-PercP-Cy5.5 (102030, BioLegend). Annexin V staining (640906, BioLegend) was performed in Annexin V binding buffer (422201, BioLegend). Flow cytometric analysis was performed on an LSRFortessa X50 (BD Biosciences) and cells were sorted on an Aria II (BD Biosciences) using FACSDiva (BD Biosciences) or FlowJo (Treestar Software).
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2

Multiparameter Flow Cytometry of Immune Cells

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Cells were stained with the following antibodies for analysis CD3-FITC (35–0031, Tonbo Bioscience), CD8-BV711 (100748, BioLegend), CD4-BV650 (100546, BioLegend), CD45-BUV395 (565967, BD Biosciences), CD90-BV785 (105331, BioLegend), CD11c-APC (20–0114, Tonbo Biosciences), MHC-II-Pac Blue (107620, BioLegend), CD103-PercPCy5.5 (121416, BioLegend), CD11b-A700 (557960, BD PharMingen), EpCAM-PercPe710 (46–5791-82, eBioscience), Ly51-PE (12–5891-83, eBioscience), CD31-PECy7 (25–0311-82, eBioscience), CD140a-APC (135907, BioLegend), UEA1-FITC (FL-1061, Vector Laboratories), TCRbeta-PECy7 (109222, BioLegend), CD62L-APC-Cy7 (104427, BioLegend), CD44-Alexa Fluor RTM700 (56–0441-82, BioLegend), CD25-PercP-Cy5.5 (102030, BioLegend). Annexin V staining (640906, BioLegend) was performed in Annexin V binding buffer (422201, BioLegend). Flow cytometric analysis was performed on an LSRFortessa X50 (BD Biosciences) and cells were sorted on an Aria II (BD Biosciences) using FACSDiva (BD Biosciences) or FlowJo (Treestar Software).
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3

Multiparametric Flow Cytometry Analysis

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Single-cell suspensions from spleens, lymph nodes, and thymi were incubated with anti-CD16/32 at 5 µg/ml for 20 min on ice to block Fc receptors. Cells were stained with the following antibodies: CD4 PerCP-Cy55, TCRβ PerCp-Cy55, and CD62L APC (TONBO); CD44 FITC, PD-1 PerCP-Cy55, CD69 Cy7PE, CD25 PerCP-Cy55 (Biolegend); CD4 BUV395, and CD8 BUV737 (BD); Vα2 PE (phycoerythrin), Vα2 Pacific Blue, Vα2 FITC, FR4 Cy7PE, and CD73 BV605 (eBioscience); and CD25 BV605 (Life Technology). Dead cells were excluded using the live/dead fixable Near-IR death cell stain kit (Invitrogen). Intracellular Foxp3-FITC staining was done according to the manufacturer’s instructions (Life Technology). For detection of negatively selected thymocytes, caspase 3 PE (BD) was used as previously described (Breed et al., 2019 (link)). For intracellular flow cytometry, antibodies against phosphorylated ERKT202/Y204 (mAb 197G2), AKTS473 (Cell Signaling) were used as previously described (Hsu et al., 2009 (link)). Antibody against Alexa 647–anti-rabbit IgG was used as a secondary antibody to detect phosphorylation of ERK and AKT.
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4

Multiparameter Flow Cytometry Immunophenotyping

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Fc-gamma receptors were blocked with a rat anti-mouse CD16/CD32 antibody (BD). Mouse-specific antibodies were the following: CD3-Brilliant violet 510, CD25-PercP Cy5.5, I-A/I-E-Brilliant violet 510, CD45R/B220-PE-Cy7, CD43-APC, CTLA-4-APC (all from BioLegend), CD4-APC-Cy7, CD69-PE, CD11c-PercP Cy5.5, CD19-APC-Cy7, CD40-FITC (all from BD Pharmingen), CD8α-PE-Cy7, FoxP3-FITC, CD86-APC, CD83-FITC, CD80-PE-Cy7, IgM-PercP-eFluor 710 (all from eBioscience).
During the experimental set-up, CD3 antibody was included in the staining panel (BV510 BioLegend clone 17A2) and used for the gating of T cells. The results obtained with gating on CD3+ CD4+ CD8- were similar to those obtained with gating on CD4+ CD8-. Due to the limitation in the maximum number of colours that can be discriminated with the FACS Canto II, CD3 staining was omitted in subsequent stainings.
Dead cells were excluded using the fixable viability dye-eFluor 450 (eBioscience), and intracellular staining was performed using the fixation/ permeabilization buffer set from eBioscience. Flow cytometry measurements were performed on a FACS Canto II instrument (BD) and the data were analyzed with FlowJo software (Tree Star).
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5

Comprehensive Immune Cell Profiling

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Cells were stained with the following antibodies for analysis CD3-FITC (35–0031, Tonbo Bioscience), CD8-BV711 (100748, BioLegend), CD4-BV650 (100546, BioLegend), CD45-BUV395 (565967, BD Biosciences), CD90-BV785 (105331, BioLegend), MHC-II-Pac Blue (107620, BioLegend), EpCAM-PercPe710 (46-5791-82, eBioscience), Ly51-PE (12-5891-83, eBioscience), UEA1-FITC (FL-1061, Vector Laboratories), TCRbeta-PECy7 (109222, BioLegend), CD62L-APC-Cy7 (104427, BioLegend), CD44-Alexa Fluor RTM700 (56-0441-82, BioLegend), CD25-PercP-Cy5.5 (102030, BioLegend). Flow cytometry analysis was performed on an LSRFortessa X50 (BD Biosciences) and cells were sorted on an Aria II (BD Biosciences) using FACSDiva (BD Biosciences) or FlowJo (Treestar Software).
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6

Comprehensive T Cell Immunophenotyping

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T cell activation was assessed by flow cytometry using the following fluorescent-conjugated antibodies: CD69-Brilliant Violet 421 (BioLegend 310929, Dedham, MA), CD25-PerCP Cy5.5 (aka IL2RA BioLegend 302626), and HLA-DR-APC (BioLegend 307610). Cell cycle was assessed using the Click-It EdU Kit (Life Technologies, Carlsbad, California). A pulse of EdU was performed 1 hour at 37°C 4%CO2 prior to cell harvest and preserved for immunofluorescent staining with Cytofix fixation buffer for 15 minutes at 37°C (BD Biosciences, San Jose, California). Apoptosis was assessed using 7-AAD (2.5 ul) plus Alexa Fluor 647-conjugated Annexin-V (2.5 ul) in the presence of 1X Annexin-V staining buffer (Life Technologies). All flow cytometry experiments were completed using either the LSR II or Fortessa Flow Cytometer (BD biosciences).
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7

Fc-gamma Receptor Blocking and Cell Staining

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Fc‐gamma receptors were blocked by incubating human cells with 200 µg/mL of IVIg (Octagam; Octapharma), and mouse samples were incubated with a rat anti‐mouse CD16/CD32 antibody (BD clone 2.4G2) diluted 1:100. Human samples were stained with the following antibodies (final concentration in the well is indicated for each antibody): CD3‐Brilliant Violet 510 1:100 (BioLegend, San Diego, CA, USA, clone OKT3), CD4‐APC‐CY7 1:100 (BD Pharmingen clone RPA‐T4), CD25‐APC 1:100 (BD Pharmingen clone 2A3) Foxp3‐PE 1:50 (eBioscience, San Diego, CA, USA clone 236A/E7). Mouse‐specific antibodies were the following: CD3‐Brilliant Violet 510 1:50 (BioLegend clone 17A2), CD4‐APC‐CY7 1:100 (BD Pharmingen clone GK1.5), CD8α‐PE‐Cy7 1:100 (eBioscience clone 53‐6.7), CD25‐PercP Cy5.5 1:100 (BioLegend clone 3C7), FoxP3‐FITC 1:50 (eBioscience clone FJK‐16s). Dead cells were excluded using the fixable viability dye‐eFluor 450 1:1000 (eBioscience), and intracellular staining was performed using the fixation/permeabilization buffer set from eBioscience). Flow cytometry measurements were performed on a FACS Canto II instrument (BD) and the data were analyzed with FlowJo software (Tree Star).
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8

Vasculogenic Potential of MNC-QQ

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Release tests for MNC-QQ were conducted to evaluate potency based on the ratio of cells and their vasculogenic potential. The presence of cell types essential for vascular and tissue regeneration in the MNC-QQ culture was confirmed using flow cytometry antibody-based detection of the following cell surface markers: CD34-PE, CD206-PE/Cy7, CD192(CCR2)-PerCP/Cy5.5, CD3-Alexa700, CD14-APC/Cy7, CD4-FITC, CD8-APC/Cy7, CD31-APC/Cy7, CD19-FITC, CD56-BV421, CD25-PerCP/Cy5.5, CD127-BV421 (BioLegend, San Diego, CA, USA), CD133-APC (Miltenyi Biotec, San Diego, CA, USA), and CXCR4-APC (BD Biosciences).17 (link),23 (link)The vasculogenic potential of MNC-QQ was evaluated using a MethoCult SF H4236 colony formation assay (STEMCELL Technologies, Vancouver, BC, Canada).22 (link) Cells (2 × 105 per dish) were inoculated into a 35-mm Primaria culture dish and cultured for 14 days under routine conditions. Clusters comprising more than 100 cells were counted as primitive EPC CFU or definitive CFU based on the cell size and shape under phase-contrast microscopy (Nikon, Tokyo, Japan). PB collected less than 1 month before cell therapy was used to compare the baseline vasculogenic potential and cell surface markers between PBMNCs and MNC-QQ cells harvested on the treatment date.
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9

Comprehensive T Cell Immunophenotyping

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T cell activation was assessed by flow cytometry using the following fluorescent-conjugated antibodies: CD69-Brilliant Violet 421 (BioLegend 310929, Dedham, MA), CD25-PerCP Cy5.5 (aka IL2RA BioLegend 302626), and HLA-DR-APC (BioLegend 307610). Cell cycle was assessed using the Click-It EdU Kit (Life Technologies, Carlsbad, California). A pulse of EdU was performed 1 hour at 37°C 4%CO2 prior to cell harvest and preserved for immunofluorescent staining with Cytofix fixation buffer for 15 minutes at 37°C (BD Biosciences, San Jose, California). Apoptosis was assessed using 7-AAD (2.5 ul) plus Alexa Fluor 647-conjugated Annexin-V (2.5 ul) in the presence of 1X Annexin-V staining buffer (Life Technologies). All flow cytometry experiments were completed using either the LSR II or Fortessa Flow Cytometer (BD biosciences).
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10

Regulatory T Cell Phenotyping Protocol

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Regulatory T cells (Tregs) were identified by surface staining with anti-CD3 Alexa700 (Exbio, Vestec, Czech Republic), CD4 PC7 (eBioscience, San Diego, CA), CD8 PE-Dy590 (Exbio), CD25 PerCPCy5.5 and CD127 Alexa647 (BioLegend, San Diego, CA) antibodies, followed by fixation and permeabilization with a FoxP3 staining buffer set (eBioscience) and intracellular staining with anti-FoxP3 FITC (eBioscience), as previously described [27 , 28 ]. All samples were processed and analyzed immediately after blood sampling on FACSAria™ (Becton Dickinson, Heidelberg, Germany) and analyzed using FlowJo software (Tree Star, Ashland, OR).
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