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11 protocols using amikacin

1

Screening of Antibiotic Resistant Mutants in P. aeruginosa

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Cells of P. aeruginosa PAO1 or mutants (107 to 109 CFU) were grown in L medium (1.0% polypeptone, 0.5% yeast extract, and 0.5% NaCl, pH 7.0) and spread onto L agar plates (1.0% polypeptone, 0.5% yeast extract, 0.5% NaCl, and 1.5% agar, pH 7.0) containing 1 × , 2 × , 4 × MIC for one of the following seven antimicrobial agents: carbenicillin, imipenem, Amikacin, gentamicin, ciprofloxacin, levofloxacin, and erythromycin. We obtained many colonies that appeared on the plates after an incubation at 37 ℃ for 24–36 h. After single-colony isolation, the drug resistance patterns of the mutants were investigated. Amikacin (Wako, cat. 014-24941), carbenicillin (Wako, cat. 037-23693), ciprofloxacin (Wako, cat. 032-18731), gentamicin (Wako, cat. 079-02973), imipenem (Wako, cat. 098-07283), levofloxacin (Fluka, cat. 28266) were purchased from indicated manufactures.
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2

Determining Antimicrobial Susceptibility Profiles

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MICs of antibiotics and disinfectants were determined by microdilution in LB broth for antibiotics or Mueller-Hinton broth (BD Biosciences) for disinfectants, as described previously (35 (link)). Antibiotic agents, such as colistin, meropenem, amikacin, and ciprofloxacin, and disinfectants, such as ethanol, H2O2, SDS, and benzalkonium, were purchased from Fujifilm Wako Pure Chemical Industries. Tigecycline was purchased from the Tokyo Chemical Industry (Tokyo, Japan). The bacterial culture was adjusted to an OD600 of 0.001 from the overnight cultures. MICs were monitored using a 2-fold dilution series for each antibiotic or disinfectant.
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3

Antimicrobial Agents Procurement Protocol

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Amikacin, ampicillin, carbenicillin, chloramphenicol, ciprofloxacin, norfloxacin, and tetracycline were purchased from Wako Pure Chemicals Industries, Ltd (Osaka, Japan). Moxifloxacin and levofloxacin were purchased from LKT Laboratories, Inc. (St. Paul, MN, USA). Imipenem/cilastatin was purchased from Sandoz K.K. (Tokyo, Japan).
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4

Bacterial Identification and Antibiotic Susceptibility

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Primary bacterial species identification and antibiotic susceptibility testing were performed with NBPcomb6.23J and Neg MIC6.31J of MicroScan WalkAway Plus (Beckman Coulter, Brea, CA, USA). Strains showing MICs of 4 mg/liter or higher for ceftazidime were judged as potential carbapenemase producers. The MICs were measured using the broth microdilution method in accordance with the CLSI guidelines (M07, 11th edition) (30 ). The following antimicrobial agents were used for antimicrobial susceptibility testing: piperacillin, ceftazidime, and imipenem (Sigma Chemical, St. Louis, MO, USA); ciprofloxacin (LKT Laboratories, St Paul, MN, USA); aztreonam (Tokyo Chemical Industry Co. Ltd., Tokyo, Japan); tazobactam (Toyama Chemical Co., Ltd., Toyama, Japan); meropenem, amikacin, and gentamicin (Wako Pure Chemical Industries, Ltd., Tokyo, Japan); and ertapenem (Merck & Co., Inc., Kenilworth, NJ, USA). The MIC measurement range was 0.125 to 256 mg/liter. E. coli ATCC 25922 and Pseudomonas aeruginosa ATCC 27853 were used as quality control strains for antibiotic susceptibility testing. The results were interpreted in accordance with the CLSI guidelines (M100, 31st edition) (31 ).
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5

Antibiotic Combination Evaluation

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Cefditoren and tebipenem were provided by Meiji Seika Pharma (Tokyo, Japan). Clarithromycin was provided by Taisho Pharmaceutical (Tokyo, Japan). Amoxicillin, amikacin, tobramycin, and gentamicin were purchased from Wako Pure Chemical. Levofloxacin was purchased from LKT Laboratories (St. Paul, MN, USA). A combined effect was defined according to the fractional inhibitory concentration (FIC) index deduced from MIC values, as follows: synergistic effect, FIC ≤ 0.5; additive effect, FIC 0.6–1.0; no effect, FIC 1.1–2; and antagonistic effect, FIC > 2.
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6

Cultivation of Mycobacterium and Actinomycetal Strains

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Kanamycin, streptomycin, amikacin, ciprofloxacin, and rifampicin were purchased from FUJIFILM Wako Pure Chemical Industries (Osaka, Japan). Clarithromycin, ethambutol, isoniazid, and pyrazinamide were purchased from Tokyo Chemical Industries (Tokyo, Japan). Unless otherwise stated, all other reagents were reagent-grade commercial products. Middlebrook 7H9 broth (Becton, Dickinson and Company, NJ, USA) was blended with 0.05% Tween 80 (Tokyo Chemical Industries) and 10% ADC enrichment [5% bovine serum albumin (FUJIFILM Wako Pure Chemical Industries), 2% glucose (FUJIFILM Wako Pure Chemical Industries), and 0.85% NaCl (FUJIFILM Wako Pure Chemical Industries)] to cultivate mycobacterium strains. Seed and production media consisted of 1.0% malt extract (Becton, Dickinson and Company), 0.4% yeast extract (Becton, Dickinson and Company), and 0.4% glucose (FUJIFILM Wako Pure Chemical Industries) to cultivate all actinomycetal strains.
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7

Determining Antimicrobial Susceptibility Profiles

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MICs of antibiotics and disinfectants were determined by microdilution in LB broth for antibiotics or Mueller-Hinton broth (BD Biosciences) for disinfectants, as described previously (35 (link)). Antibiotic agents, such as colistin, meropenem, amikacin, and ciprofloxacin, and disinfectants, such as ethanol, H2O2, SDS, and benzalkonium, were purchased from Fujifilm Wako Pure Chemical Industries. Tigecycline was purchased from the Tokyo Chemical Industry (Tokyo, Japan). The bacterial culture was adjusted to an OD600 of 0.001 from the overnight cultures. MICs were monitored using a 2-fold dilution series for each antibiotic or disinfectant.
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8

Evaluating Colistin Susceptibility in Bacteria

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CST, ampicillin, meropenem, gentamicin, and amikacin were purchased from FUJIFILM Wako Pure Chemical Corp. (Osaka, Japan). Cefotaxime and ciprofloxacin were purchased from Tokyo Chemical Industry (Tokyo, Japan). Minimum inhibitory concentration (MIC)s were determined by the broth microdilution method using cation-adjusted Mueller–Hinton II broth (MHII broth; Becton, Dickinson and Co., Franklin Lakes, NJ) according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI) [20 ]. Isolates with a CST MIC of ≥ 4 mg/L were defined as CST-resistant according to CLSI M100-S32.
Bacterial growth was measured by assessing turbidity (OD600) after cultivation for 20 h under the same condition as used for the susceptibility test in the presence of CST (0–128 mg/L). Turbidity was measured using an Infinite M200 PRO instrument (Tecan, Kawasaki, Japan). The skip-well phenomenon was defined as no growth (OD600 < 0.1) at a certain CST concentration(s) and growth (OD600 > 0.5) at higher CST concentrations. Data are expressed as the means ± standard deviations from independent triplicate experiments.
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9

Antimicrobial Susceptibility Testing by Microdilution

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Antimicrobial activity was determined by the microdilution method according to CLSI (18) . After 72 hours of incubation at 37°C under aerobic conditions, bacterial growth was visually confirmed. The minimum concentration of antimicrobial agent that completely inhibited bacterial growth was determined as the minimum inhibitory concentration (MIC). The antimicrobial agents used were amikacin, minocycline, imipenem, sulfamethoxazole, trimethoprim, linezolid, erythromycin, oxacillin (FUJIFILM Wako Pure Chemical Corporation Tokyo, Japan), levofloxacin (Tokyo Pure Chemical Corporation Tokyo, Japan).
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10

Antibiotic-Susceptible P. aeruginosa Isolates

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A total 413 clinical isolates of P. aeruginosa were collected from 16 general hospitals in the Tohoku district, Japan. Twenty clinical isolates which showed susceptibility to six anti-pseudomonal agents; piperacillin, levofloxacin, tazobactam/piperacillin, meropenem, ceftazidime and amikacin, and also their viability to survive against 1 mM H 2 O 2 , used as a ROS, were selected. The specimen origins of these strains are as follows: sputum (35%), urine (30%), pharynx (10%), and others (25%) (Table 1).
Powders of piperacillin (Taisho-Toyama Pharmaceutical Co., Ltd., Tokyo), levofloxacin (Wako, Osaka), amikacin (Wako), ceftazidime (Wako), meropenem (Sumitomo Dainippon Pharma Co. Ltd., Osaka), and tazobactam (Sigma-aldrich, Darmstadt, Germany) were used in this study. An a-lipoic acid derivative, sodium zinc histidine dithiooctamide (DHL-His-Zn) (Fig. 1) was used as anti-ROS agent [9e12]. Efflux pump inhibitors, carbonyl cyanide m-chlorophenyl hydrazone (CCCP: Wako) and phenylalanine-arginine-b-naphthylamide (PabN: Sigma-aldrich) were also prepared.
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