The largest database of trusted experimental protocols

40 protocols using horseradish peroxidase hrp

1

Cavin-3 Expression in Vascular and Bladder Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Small mesenteric arteries, caudal arteries and urinary bladders were fixed in 4% paraformaldehyde and embedded in paraffin. Sections (5 μm thick) were cut, mounted on slides and deparaffinized. Sections were incubated overnight (4 °C) with primary antibodies dissolved in PBS (pH 7.2) containing 3% bovine serum albumin and 0.25% Triton X-100. The primary antibody used was rabbit anti-cavin-3 (16250-1-AP, ProteinTech group, Chicago, Ill., USA) and sections were subsequently rinsed (2 × 10 min) in PBS with 0.25% Triton X-100 followed by incubation with secondary antibody. For fluorescence imaging, secondary antibodies with specificity for rabbit and coupled to Cy2 (Jackson, West Grove, Pa., USA) were used and nuclei were stained with 4,6-diamidino-2-phenylindole (DAPI). Fluorescence micrographs were captured via an Olympus DP72 microscope equipped with a digital camera and by using Olympus CellSensDimension software. For immunohistochemistry of the bladder, the tissue was blocked with 4% H2O2 in methanol for 20 min at room temperature to inhibit endogenous peroxidase activity. Visualization of cavin-3 expression was performed by using secondary antibodies conjugated with HRP (horseradish peroxidase; Cell Signaling) at a 1:200 dilution and nuclei were counterstained with hematoxylin (Histolab).
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Thbs4 and ATF6α

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sham-operated and obstructed bladders were fixed in PBS containing 4% formaldehyde, dehydrated and embedded in paraffin. 5 μm cross-sections were dewaxed, rehydrated with descending concentrations of ethanol and rinsed in distilled water. Tissues and cells were blocked with 3% bovine serum albumin (BSA) for 2 h at room temperature and then incubated overnight at 4 °C with a rabbit Thbs4 and ATF6α antibodies (1:100 in 3% BSA), followed by blocking of endogenous peroxidase activity with 4% H2O2 in methanol for 20 minutes at room temperature. Immunoreactivity was visualized using secondary antibodies conjugated with HRP (horseradish peroxidase, Cell Signaling) or with Alexa 555 (Invitrogen, A21422) at 1:200 dilution. Nuclei were counterstained with hematoxylin (Histolab) or with DAPI (Invitrogen). 3,3´-diaminobenzidine tetrahydrochloride (DAB, Dako) and fluorescence were analyzed using an Olympus DP72 microscope equipped with a digital camera. Images were captured using Olympus CellSensDimension software.
ATF6α antibody (NBP-1-20256, Biotechne 1:100) was incubated with blocking peptide (H00022926, Biotechne) in excess (1:3) over night at 4 degrees.
+ Open protocol
+ Expand
3

Western Blot Analysis of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For total protein analysis, cells were harvested with lysis buffer (50 mM Tris, 150 mM NaCl, 1% Triton X-100, 0.5% Na-deoxycholate, 0.4% β-Mercaptoethanol, Proteinase-Inhibitor Cocktail, Roche, Mannheim, Germany). Clarified protein lysate was applied to a polyacrylamide gel and analyzed by western blotting [95 (link), 96 (link)]. To this end, 30-50 μg protein of whole cell lysate was incubated with primary antibody for Orai1 (1:1000, Millipore, Bedford, MA, USA, [22 (link)]), STIM1 (1:1000, cell signaling, Danvers, MA, USA, [97 (link)]), Akt (1:1000, cell signaling, Danvers, MA, USA, [93 (link)], Phospho-Akt (Thr308) (1:1000, cell signaling, Danvers, MA, USA, [93 (link)]and GAPDH (1:1000, cell signaling, Danvers, MA, USA, [98 (link)]). For detection secondary antibody conjugated with horseradish peroxidase (HRP) (1:2000, Cell Signaling, Danvers, MA, USA) was used. Antibody binding was identified with ECL detection reagent (Amersham, Freiburg, Germany). Bands were quantified with Quantity One Software (Biorad, München, Germany [22 (link)]). The appropriate band has been defined by using Orai1 overexpressing cells [22 (link), 24 (link)].
+ Open protocol
+ Expand
4

SARS-CoV-2 S1 Protein ELISA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant SARS-CoV2 S1 protein (cat# Z03501; Genscript) was diluted to 1.5 μg/mL in phosphate-buffered saline (PBS) and immobilized on 96-well enzyme-linked immunosorbent assay (ELISA) plates overnight at 4°C. After blocking with StartingBlock blocking buffer (Thermo Scientific), MO7e culture medium or diluted serum samples were added to the wells. An anti-influenza hemagglutinin (HA)-tag antibody conjugated with horseradish peroxidase (HRP; Cell Signaling) was used to detect binding.
+ Open protocol
+ Expand
5

Western Blot Analysis of Protein Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in RIPA lysis buffer (Thermo Scientific, Rockford, IL). Protein concentration was measured using a Bradford protein assay (Thermo Scientific, Rockford, IL). Equal amount of protein (30 μg) were separated by 8% SDS-PAGE and transferred to a PVDF membrane by electroblotting. Membranes were blocked by 5% non-fat dry milk (LabScientific, Highlands, NJ) or bovine serum albumin (Santa Cruz Biotechnology, Dallas, TX) in 0.1% Tris-buffered saline-Tween-20 (TBST) for 1 h at room temperature and incubated in TBST containing primary antibodies overnight at 4 °C. Membranes were incubated with anti-rabbit or anti-mouse secondary antibody conjugated with horseradish peroxidase (HRP) (Cell Signaling Technology, Danver, MA) for 1 h at room temperature. Protein expression was detected with Super Signal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL) and membranes were exposed and analyzed via Li-Cor Odyssey FC imaging system (Li-Cor, Lincoln, NE). Antibodies against p-AMPKα (Thr172), AMPKα, p-ACC (Ser79), ACC, p-LKB1 (Ser428), LKB1, p- PKCζ (Thr410), PKCζ, and p-CaMKKβ (Ser511) were used to detect target protein level at 1:1000. β-Actin or glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology, Dallas, TX) was used as the loading control.
+ Open protocol
+ Expand
6

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in RIPA buffer with protease inhibitors (Roche). After quantification using a BCA protein assay kit (Pierce), 40 µg of total protein was separated by 10% SDS-PAGE under denaturing conditions and transferred to PVDF membranes (GE Healthcare). Membranes were blocked in 5% BSA (Sigma) and then incubated with a Msi2 primary antibody (1:1000; Novus Biologicals), Msi1 (1:1,000; MBL), NICD (1:1,000; Abcam), Hes1 (1:1,000; Abcam), β-actin (1:10000, Abcam), or Pten (1:1000, Cell Signaling) APC (1:200, Santa Cruz sc-896) followed by incubation with a secondary antibody conjugated with horseradish peroxidase (HRP) (1:2,000; Cell Signaling) together with an HRP-conjugated primary antibody for β-actin (1:10,000; Sigma). Immunoreactive proteins were visualized using LumiGLO chemiluminescent substrate (Pierce). Raw scans of Western blots in Figures 4C, 5C, 6F, and 7A can be found in the supplementary information accompanying the manuscript.
+ Open protocol
+ Expand
7

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
With a phosphatase and protease inhibitor cocktail (Beyotime, China), cells were lysed and sonicated in RIPA (Beyotime, China) lysis solution. Proteins were separated by SDS‒PAGE and then transferred to a PVDF membrane (Merck Millipore, USA). Following 1 h at room temperature in a buffer containing 5% skim milk (BD Biosciences, USA) and 0.1% Tween 20 (Beyotime, China), the membranes were blocked. The membrane was then treated with the primary antibodies specified overnight at 4 °C, followed by incubation with goat anti-mouse or anti-rabbit secondary antibodies conjugated with horseradish peroxidase (HRP) (Cell Signaling Technology, USA) for 1 h. PierceTM ECL western blotting substrate (Thermo Fisher, USA) and Bio-Rad ChemiDoc Touch were used to detect and analyze the proteins. Antibodies against the following targets were used in this study: phospho-mTOR, mTOR, LC3B, P62, cleaved caspase 3, γ-H2A (5536, 2983, 3868, 23214, 9661, 2577, Cell Signaling Technology, USA), phospho-RPA2 (381220, Zen BioScience, China), actin (A5441, Sigma‒Aldrich, USA), RPA2 (ab76420, Abcam, USA), and Ki-67 (14-5698-82, Thermo Fisher, USA).
+ Open protocol
+ Expand
8

Analysis of DNA Damage Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed using cell lysis buffer (Cell Signaling) with complete protease inhibitor cocktail (1:1,000, Roche) and Halt phosphatase inhibitor cocktail (1:100, Thermo). After total protein quantification using a Bradford reagent (Bio-Rad), 20 μg of cell lysate protein was resolved by 4–15% SDS-PAGE (Bio-Rad) under denaturing conditions, and transferred to PVDF membranes. Membranes were blocked in 5% BSA and then incubated with anti- phospho-H2AX (1:1,000, Cell Signaling), phospho-Chk1-Ser317 (1:1,000; Cell Signaling), phospho-Chk2-Thr68 (1:1,000, Cell Signaling), caspase-3 (1:1,000; Cell Signaling), cleaved caspse-3 (1:1,000; Cell Signaling), PARP (1:1,000; Cell Signaling), and GAPDH (1:5,000, Cell Signaling) antibodies, followed by incubation with a secondary antibody conjugated with horseradish peroxidase (HRP) (1:2,000; Cell Signaling). Signals were visualized using ECL Prime Western Blotting Detection reagent (Amersham).
+ Open protocol
+ Expand
9

AMPK Activation in LβT2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Overnight serum-starved LβT2 cells were treated either with 25 mM 2-deoxy-D-glucose (2DG) for 0.5, 1 or 4 h, or with 100 or 200 μM AICAR for 24 h and then lysed in
extraction buffer (50 mM Tris-Cl, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100) containing 1% protease inhibitors (Nakarai Tesque, Kyoto, Japan) and a phosphatase inhibitor cocktail
(Sigma-Aldrich). Total cell lysates were centrifuged at 15000 g for 5 min. Supernatants were mixed with 4 × sodium dodecyl sulfate sample buffer, boiled, and separated in
polyacrylamide gels. Proteins were then transferred to polyvinylidene difluoride membranes (Millipore, San Jose, CA, USA). The membranes were probed with primary antibodies at the following
dilutions: anti-AMPKα polyclonal antibody (1:1000; Cell Signaling Technology, Danvers, MA, USA), anti-phospho-AMPKα (Thr172) polyclonal antibody (1:1000; Cell Signaling Technology), or
anti-β-actin monoclonal antibody (1:2000; Sigma-Aldrich). Membranes were further incubated with anti-rabbit IgG antibody conjugated to horseradish peroxidase (HRP) (1:4000, Cell Signaling
Technology) or HRP-conjugated anti-mouse IgG antibody (1:2000, Santa Cruz Biotechnology, Dallas, TX, USA), and developed with ImmunoStar Zeta (Fujifilm Wako Chemicals, Osaka, Japan).
Chemiluminescence was recorded using an ImageQuant LAS 500 (GE Healthcare, Chicago, IL, USA).
+ Open protocol
+ Expand
10

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue and cell lysates were prepared with RIPA buffer (1x PBS, 1% Nonidet P40, 0.5% sodium deoxycholate, 0.1% SDS and protease inhibitor cocktail (Roche). Total protein concentration was measured using BCA Protein Assay Kit (Cat: 23225; Pierce, Rockford). Equal amounts of proteins were separated by SDS-PAGE and western blotted onto a 0.45 μm- nitrocellulose membrane. Membranes were blocked in 5% defatted milk in Tris-buffered saline containing 0.1% Tween-20 (TBST), probed with diluted antibodies and incubated at 4°C overnight. The following primary antibodies were utilized: rabbit polyclonal anti-Pten (1:1000 dilution, Cell Signaling), rabbit polyclonal anti-p16 (1:1000 dilution, clone M156; Santa Cruz Biotechnology), rabbit monoclonal anti-TNFR1 (1:1000 dilution, Cell Signaling), rabbit polyclonal anti-HSP90 (1:1000 dilution, Cell Signaling), mouse monoclonal anti-α-Tubulin (1:1000 dilution, Cell Signaling), rabbit monoclonal anti-STAT6 (1:1000 dilution, Cell Signaling), goat polyclonal anti-pSTAT6 (1:500 dilution, Santa Cruz Biotechnology). After washing in TBST, the membrane was incubated with secondary antibody conjugated with horseradish peroxidase (HRP) (dilution 1:5000, Cell Signaling). The protein bands were visualized using the ECL Western Blotting Substrate (Pierce).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!