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22 protocols using ab32520

1

Detecting RP11-468E2.5 Binding to STAT5/STAT6

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The binding interactions of RP11-468E2.5 with STAT5 or STAT6 protein were detected using the RIP kit (Millipore Inc., Bedford, MA, USA). Briefly, after a pre-cooled PBS wash, the supernatant was discarded. Then, cells were lysed with lysis buffer and centrifuged at 4 °C and 12,000 g for 10 min. A small amount of supernatant was taken as an input, and the remainder was co-precipitated with antibodies. Specifically, the beads were washed in PBS and resuspended in 100 μl RIP wash buffer. To each group of samples, we added 5 μg diluted antibodies against STAT5 (1:100; ab36153; Abcam Inc., Shanghai, China), STAT6 (1:80; ab32520; Abcam Inc., Shanghai, China), or IgG (1:1000; ab172730; Abcam Inc., Shanghai, China). Here, the IgG group served as NC. The bead-antibody complex was then washed and resuspended in 900 μl RIP wash buffer, followed by incubation with 100 μl cell extract overnight at 4 °C. The samples were then placed on a permanent magnetic base to collect the magnetic bead-protein complexes. RNA was extracted after digestion of the samples and of the total input sample with proteinase K prior to further PCR quantitation.
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2

Western Blot Analysis of THP-1 Cell Signaling

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THP-1 cells were rinsed twice with ice-cold PBS and lysed with RIPA buffer (150 mM NaCl, 1 mM EGTA, 50 mM Tris pH 7.4, 10% glycerol, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, and protease inhibitor cocktail). The protein concentration of the cell lysates was measured using the Bradford reagent (Thermo Fisher, USA). Next, 30 μg of each protein sample was separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto nitrocellulose (NC) paper. The resultant NC papers were then incubated overnight at 4 °C with a range of specific primary antibodies, including signal transducer and activator of transcription (STAT6) (1:1000, ab32520, Abcam, USA), p-STAT6 (1:1000, ab28829, Abcam, USA), peroxisome proliferator-activated receptor γ (PPARγ) (1:1000, #2435, Cell Signaling, USA), high mobility group protein B1 (HMGB1) (1:5000, ab18256, Abcam, USA), and interleukin-4 receptor (IL-4 R) (1:1000, ab203398, Abcam, USA). After incubation with the indicated primary antibody, the proteins of interest were then incubated with a horseradish peroxidase (HRP)-conjugated secondary antibody (Millipore, USA) and visualized by the ECL detection system (Millipore, USA).
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3

Immunoblotting Analysis of IL-4 and PDAC-CM Induced Macrophage Polarization

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BMDMs and THP-1 cells were treated with IL-4 (MUS: Pepro Tech, 214–14; HUM: Pepro Tech, 200–04) or a 1:1 solution of PDAC-CM and complete medium containing 10% FBS for 48 h. NuPAGE™ LDS Sample Buffer (Invitrogen, NP0007) was directly added to the cell culture plate to lyse the cells on ice. The protein was heated in an iron bath at 70°C for 10 min, separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE), and electrotransferred to a polyvinylidene fluoride (PVDF) membrane (Merck Millipore). The main antibodies used in the research were CD206 (ab64693, Abcam), Arg-1 (93,668, CST), p-Akt (4060S, CST), Akt (4691S, CST), p-Stat6 (ab263947, Abcam), Stat6 (ab32520, Abcam), p-mTOR (5,536, CST), mTOR (2,983, CST), mouse IL4Rα (MAB530, R&D system), human IL4Rα (MAB230, R&D system), CSF1R (ab254357, Abcam), p-Stat3 (ab76315, Abcam), and Ym-1 (ab192029, Abcam). The protein bands were observed using an enhanced chemiluminescence (ECL) detection kit (P10100, NCM), and images were obtained using a chemiluminescence detection system (Bio–Rad).
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4

Quantification of Pu.1, Stat6, and pStat6 in Mouse Macrophages

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Whole-cell lysates were obtained from mouse mφs at the specified time points by lysing the cells in complete radioimmunoprecipitation lysis buffer (1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, 1 mM PMSF, 2 mM sodium orthovanadate, and 1× protease inhibitor mixture [Fisher, BPE9706-1] in PBS). Phosphatase inhibitor was added to the lysis buffer when harvesting cell lysates for pStat6 detection. Cell lysate (10 μg) was subjected to 10% SDS-PAGE and transferred to polyvinylidene difluoride membrane. The blot was incubated with either goat polyclonal anti-Pu.1 (1:200, D-19, sc-5949; Santa Cruz Biotechnology), rabbit monoclonal anti-Stat6 (1:2000, YE361, ab32520; Abcam), or rabbit polyclonal anti-pStat6 (1:1000, Tyr641, ab195647; Abcam). Protein was detected using ECL (Thermo Fisher Scientific).
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5

Quantifying Macrophage Protein Levels

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Peritoneal macrophages were washed with ice‐cold PBS and homogenized on ice using RIPA lysis buffer (Beyotime) supplemented with complete protease inhibitor (Beyotime). Samples were loaded on 10% SDS‐PAGE and transferred onto PVDF membranes (Bio‐Rad, Shanghai, China). Membranes were blocked with 5% non‐fat dry milk and incubated with primary antibodies against iNOS (ab129372; Abcam, Cambridge, USA), Arg‐I (ab91279; Abcam), p‐STAT6 (ab54461; Abcam), STAT6 (ab32520; Abcam), respectively. β‐actin was used as control. The intensities of the corresponding protein bands were evaluated by densitometry via Image J (National Institutes of Health, USA) Protein expression was assessed relative to β‐actin or indicated protein.
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6

STAT Expression and Phosphorylation in Lung Tissue

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The expression levels of STAT1, STAT4, STAT6 and the corresponding phosphorylated proteins in lung digests were analyzed by Western blot analysis. Cell lysates (40 μg) were separated by 10% sodium dodecyl sulfate-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Roche, USA). After incubation in a blocking buffer containing 5% skim milk in TBST (12.5 mM Tris–HCl pH 7.5, 68.5 mM NaCl, and 0.1% Tween 20) for 1 h, the blots were incubated overnight with primary antibodies including rabbit anti-STAT1 (D1K9Y, Cell Signaling Technology, USA), rabbit anti-phosphorylated STAT1 (Tyr701, Cell Signaling Technology, USA), rabbit anti-STAT4 (C46B10, Cell Signaling Technology, USA), rabbit anti-phosphorylated STAT4 (ab28815, Abcam, UK), rabbit anti-STAT6 (ab32520, Abcam, UK), and rabbit anti-phosphorylated STAT6 (ab28829, Abcam, UK). An anti-mouse GAPDH antibody was used as a loading control. The blots were washed with TBST, incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit Ig (Jackson ImmunoResearch) and then developed with an enhanced chemiluminescence (ECL) substrate solution (Millipore).
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7

STAT6-Mediated Chromatin Immunoprecipitation

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STAT6 overexpression vector or NC vector was transfected in M0 macrophages for 24 h. Then, cells were under M2 polarization. Forty-eight hours later, cells were harvested for chromatin immunoprecipitation (ChIP) assays. ChIP assays were performed following the methods described previously [52 (link)] using antibodies against STAT6 (ab32520, Abcam), a positive control antibody (RNA polymerase II), and a negative control non-immune IgG. The immunoprecipitated DNA was cleaned, released, eluted, and used for real-time PCR. The fold-enrichment (FE) was calculated as previously described [52 (link)].
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8

Isolation and Characterization of Nar Protein

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Nar was isolated from bulbs of Narcissus species in our laboratory. Protease inhibitor, phosphatase inhibitor, and pronase were from Roche (Mannhein, Germany). CNBr-activated Sepharose 4B was obtained from Sigma (St. Louis, MO, USA). Recombinant human IL-6 was purchased from PeproTech (Rocky Hill, NJ, USA). BTZ and NAC were from MedChemExpress (Monmouth Junction, NJ, USA). Antibodies specific for cyclin D1 (ab40754), c-Myc (ab32072), STAT1 (ab109320), STAT2 (ab32367), STAT4 (ab68156), STAT5 (ab194898), and STAT6 (ab32520) were from Abcam (Cambridge, UK), and antibodies for STAT3 (9139 and 4904), p-STAT3 (9145), P53 (2527), and survivin (2808) were from Cell Signaling Technology (Danvers, MA, USA).
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9

Protein Extraction and Western Blot Analysis

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Samples were homogenized in lysis buffer (pH 7.4) containing a protease inhibitor cocktail (HY-K0010, MedChenExpress), phosphatase inhibitor cocktail III (HY-K0023, MedChenExpress), 50 mM Tris, 150 mM NaCl, 5 mM ethylenediaminetetraacetic acid (EDTA), and 0.5% NP-40 (Sigma-Aldrich). The protein concentration was determined using a BCA Protein Assay kit (Tiangen Biotech). Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was performed, and the samples were blotted onto a polyvinylidene fluoride (PVDF) membrane. Antibodies against DPP4 (ab28340, Abcam), F4/80 (28463-1-AP, Proteintech), CD206 (18704-1-AP, Proteintech), p44/42 MAPK (Erk1/2) (137F5) rabbit mAb (4695, Cell Signaling Technology), Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (9101, Cell Signaling Technology), signal transducer and activator of transcription 6 (STAT6) (ab32520, Abcam), and Phospho-STAT6 (phospho Y641) (ab263947, Abcam) were used at a dilution of 1:2000. Secondary antibody binding and detection were performed according to standard protocols using an enhanced chemiluminescence (ECL) detection reagent (Bio-Rad).
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10

Investigating STAT1 and STAT6 Phosphorylation

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Rabbit monoclonal anti–Tyr641–phosphorylated STAT6 (p-STAT6) antibody (ab54461) and rabbit monoclonal anti–STAT6 antibody (ab32520) were bought from Abcam (Cambridge, MA). Rabbit monoclonal anti–Tyr701–phosphorylated STAT1 (p-STAT1) antibody (#9167) and rabbit polyclonal anti–STAT1 antibody (#9172) were bought from Cell Signaling Technology (Beverly, MA). Goat polyclonal anti–platelet–derived growth factor (PDGF) receptor α antibody (AF1062) was bought from Roche (Nutley, NJ). Rat monoclonal anti-Mac3 antibody (550292) was bought from BD Pharmingen (San Diego, CA). Bleomycin was bought from Nippon Kayaku (Tokyo, Japan). 4-[2((1R,2R)-2-Hydroxycyclohexylamino)-benzothiazol-6-yloxyl]-pyridine- 2-carboxylic acid methylamide (BLZ945) was purchased from Chemshuttle (Jiangsu, China). Rat monoclonal IgG2a anti-mouse IL-13 antibody (38213) and control rat monoclonal IgG2a (54447) were bought from R&D systems (Minneapolis, MN). 4’6-diamidino-2-phenylindole (DAPI) (D1306) was purchased from Molecular Probes (Eugene, OR). FastStart Universal SYBR Green Master was bought from Roche (Nutley, NJ). All other reagents were bought from Wako (Osaka, Japan) unless otherwise specified. An S1PR2–specific antagonist (S1PR2i) [18 ] was provided by Ono Pharmaceutical Co.
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