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13 protocols using mhcii pe

1

Multicolor Flow Cytometry of Immune Cells

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The above isolated cells were blocked with 10 % normal rat serum/PBS on ice for 30 min. The brain mononuclear cells were stained with a combination of anti-mouse antibodies CD206-FITC + MHCII-PE + F4/80-PE/Cy7 + CD45-APC and the splenocytes with a combination of CD11b-FITC + CD45-PE + F4/80-PE/Cy7 + Gr-1-APC or CD206-FITC + MHCII-PE + F4/80-PE/Cy7 + CD45-APC (all from BioLegend) on ice, protected from light, for 30 min. Cells were washed and resuspended in 500 μl PBS/1 % FCS/0.02 % NaN3. The flow cytometric data were acquired with a two-laser, six-color Gallios flow cytometer and analyzed by Kaluza analysis 1.3 software (Beckman Coulter). Brain mononuclear cells were defined as follows: microglia CD45+F4/80+, macrophages CD45hiF4/80+, M1-type macrophages CD45hiF4/80+MHCII+CD206, and M2-type macrophages CD45hiF4/80+MHCII−/+CD206+. Splenocytes were defined as follows: granulocytes CD45+F4/80−/+Gr-1++, monocytes CD45+F4/80Gr-1+, monocyte-derived macrophages CD45+CD11b+F4/80+Gr-1, tissue-resident macrophages CD45+F4/80++Gr-1−/+, M1-type macrophages CD45+F4/80+MHCII+CD206, and M2-type macrophages CD45+F4/80+MHCII−/+CD206+. Cell populations were calculated as percentages among total leukocytes or macrophages.
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2

Comprehensive Immune Cell Analysis

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The following antibodies were used to characterize BMDCs and assess their activation state: MHC II-PE, CD11c-APC, CD86-PE-Cy7, CD80-FITC and CD11b-APC-Cy7 (all from BioLegend). Acquisition was performed on an Attune NxT (ThermoFisher). Leukocyte populations from BM, liver and spleen were also analyzed by flow cytometry. Single cells were excluded from dead cells using the LIVE/ DEAD Zombie NIR Fixable Viability Kit (BioLegend). Immuno-phenotyping was performed using the following antibodies: CD45-BV510, CD49b-PE-Dazzle, CD19-PerCP, CD3-FITC, CD4-AF700, CD8-BV785, C44-BV650 and CD62L-BV421 (all from BioLegend). Full minus one (FMO) controls were used to determine positivity. Precision count beads (BioLegend) were used to count immune cells in different organs. Before acquisition, stained cells were fixed with 1% Paraformaldehyde (Sigma-Aldrich). Acquisition was performed using the BD LSRFortessa and data were analyzed using the FlowJo software (TreeStar) version 10.
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3

Glycocalyx and Lymphocyte Phenotyping

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Cells were characterized by flow cytometry using the monoclonal antibodies (mAbs) CD11b/c-APC, CD80-PE, CD86-PE, MHCI-FITC, and MHCII-PE (BioLegend, San Diego, CA, USA). For analysis of the glycocalyx, lectins from Maackia amurensis (MAL II, indicating α2-3 Sia) and Sambucus nigra (SNA-I, indicating α2-6 Sia) were used (Vector Labs). Lectins were biotin conjugated. PE-streptavidin was used for detection. Negative controls for non-specific fluorescence were used, these consisted of PE-streptavidin staining solutions in the absence of the lectin conjugated to biotin. Lectins were prepared in lectin staining buffer (PBS containing 1% FBS, 1 mmol/L CaCl2, and 2 mmol/L MgCl2) and resuspended in FACS buffer (PBS containing 2% fetal calf serum and 0.01% NaN3, all from Sigma-Aldrich) before analysis using a FACS Canto II (BD Biosciences, Oxford, UK).
For analysis of the assays involving lymphocytes from the lymph nodes and spleen, the following mAbs were used CD3/PE, CD8/PE-Cy7, CD4/APC (BioLegend), and CD25/FITC (eBioscience, San Diego, CA, USA). Prior to staining, cells were washed with FACS buffer. mAbs were diluted in 50 µL FACS buffer, added to the cells, and incubated for 15 min at 4°C. To remove any unbound antibodies, the cells were washed three times with FACS buffer. The cells were then filtered through a nylon mesh (40 µm) before analysis in the cytometer.
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4

Multicolor Flow Cytometry of Myeloid Cells

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CD45 APC‐Cy7 (1:100, BioLegend, clone 30‐F11), MHC‐II PE (1:1,000, BioLegend, clone M5), CD11b PE‐Cy7 (1:100, BioLegend, clone M1/70), F4/80 APC (1:50, eBioscience, clone BM8), Ly6G PE (1:50, BioLegend), and 7AAD PerCP (2.5 μl/sample, Sigma).
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5

Comprehensive Immune Cell Profiling

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We used the following antibodies: CD4-PErCP (100538), CD8-APC/Cy7 (100713), CD69-FITC (104506), CD25-APC (101910), IFNγ-APC (505810), IL17-PE/Cy7 (506922), CD11b-APC/Cy7 (101226), CD11c-APC (117310), CD80-FITC (104706), MHCII-PE (107607), CD3-PacificBlue (100214), CD4-PE (100512), CD4-APC (100516) and CD4-FITC (100510) from Biolegend, USA.
SIRT2 (ab211033), β-actin (ab8227), acH3K18 (ab40888), α-tubulin (ab184613), acetyl-α-tubulin (ab179484), acetyl-NFκB p65 (ab19870), Alexa Fluor 647 (ab150075) and IgG-APC isotype control (ab232814) from Abcam.
ERK1/2 (9102), Phospho-ERK1/2 (9101), p-38 (9212) and phospho-p38 (4511) from Cell Signaling Technology.
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6

Multiparameter Flow Cytometry of Lymph Nodes

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For flow cytometric analysis of LN cellularity, inguinal LNs from individual mice were pooled and digested on 37°C in RPMI containing 2% FCS, 20 mM Hepes (all from Lonza), 1 mg/ml Collagenase Type P (Sigma-Aldrich), and 25 μg/ml DNaseI (AppliChem) for 20 min. After enzymatic digestion, cell suspensions were washed with PBS and stained using the following antibodies: CD3-PE (BD Bioscience), CD8-PeCy7, CD4-FITC, CD45-APC-H7, MHCII-PE, CD11c-PeCy7, B220-APC (BioLegend). In flow cytometric analyses, 7-amino-actinomycin D (7AAD; Calbiochem) was used to discriminate dead cells. Samples were analyzed by flow cytometry using a FACSCanto flow cytometer (BD Biosciences); data were analyzed using FlowJo software (Tree Star).
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7

Brain Immune Cell Characterization

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Dissected brain tissues were homogenized through 70 µm cell strainers (#352350, BD Bioscience) in ice-cold flow buffer (PBS with 1% fetal calf serum). Isolated cells were blocked with 10% rat serum in ice-cold PBS for 60 min and stained with 0.5 µL mAb flow markers (all Biolegend, San Diego, CA, USA) of anti-mouse MHCII-PE (#107608), CD11b-PerCP/Cy5.5 (#101228), CD45-PECy7 (#103114), and CD206-APC (#141708) as well as isotype control rat antibodies IgG2b-PE (#400607), IgG2b-PErCP/Cy5.5 (#400631), IgG2b-PECy7 (#400617), and IgG2a-APC (#400511) in a flow buffer for 1 h. Cells were then fixed with 4% paraformaldehyde followed by permeabilization with 0.05% triton X-100 in PBS at 4 °C. After washings, cells were incubated with an anti-vesicular glutamate transporter-2 (VGLUT2) mAb-Alexa488 (#MAB5504A4, Millipore, Burlington, MA, USA) or isotype ctrl mAb-Alexa488 (#400132, Biolegend) for 60 min at 4 °C. Washed and resuspended cells were acquired with a Fortessa flow cytometer (BD Bioscience). Data were analyzed using Kaluza v2.1 software (Beckman Coulter, Brea, CA, USA). Macrophages were defined as CD45highCD11bhigh and microglia as CD45lowCD11bhigh cells. Cell numbers of microglia and macrophages normalized against equal amounts of collected brain cells were quantified, and percentages were calculated.
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8

Multiparameter Flow Cytometry Analysis

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Thoracic cavity, spleen, BAL and skin cells were analyzed by flow cytometry. Cells were isolated as described above and subsequently blocked with PBS/1% BSA including 0.1% rat IgG (Sigma) and stained. Flow cytometric analysis was performed using a combination of the following surface markers: CD4-FITC, CD8-APC, SiglecF-PE, F4/80-PerCP-Cy5.5, CD11b-APC-Cy7 (all BioLegend), and Ly6G-PE-Cy7 (ThermoFisher). Thoracic cavity and spleen CD4+ T cells and CD8+ T cells were identified as CD4high or CD8high cells, respectively; neutrophils as Ly6Ghigh, CD4low; eosinophils as SiglecFhigh, F4/80low; macrophage populations were identified as F4/80high, SiglecFlow. BAL macrophages were identified as F4/80high, SiglecFhigh and neutrophils as Ly6Ghigh/CD11bhigh. Cells were further analyzed with MHCII-PE (BioLegend) in a different panel. Cells were stained and after another wash and centrifugation step cells were analysed by flow cytometry. Analysis was performed using a BD FACS Canto system and data was subsequently analyzed using the FACS Diva 5.1 software (BD Biosciences). During analysis, cut-offs were set using the fluorescence minus one (FMO) approach. The gating strategy is shown in S1 Fig.
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9

Multiparametric Phenotyping of Dendritic Cells

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Cells were harvested and stained for 20 min at 4°C with the antibody mix. After a wash in PBS with 2% of FCS, cells were stained with Fixable Viability Dye eFluor 506 (eBiosciences, 65–0866-14) for 10 min at room temperature. Cells were then fixed for 20 min in 3.2% PFA at room temperature. mAbs in the staining mix for BMDCs or splenocytes were the following: CD11c PeCy7 (N418), MHC II PE (M5/11.15.2), CD86 FITC (GL-1), CD86 PE (GL-1), CD80 PeCy5 (16–10A1), CD40 APC (HM40–3), CD24 FITC (M1/69), NK1.1 APC-Cy7 (PK136), PDL-1 BV605 (10F.9G2) from Biolegend; MHCII A700 (M5/11.15.2), CD11b eF450 (M1/70), Bst-2 EF610 (eBio927), DC-SIGN APC (eBio22D1) from eBiosciences; CD40 PeCy5 (3/23), B220 PETXR (RA3–6B2), CD3 APC-Cy7 (145–2C11), CD19 APC-Cy7 (1D3), CD64 PE (X54–5/7.1), CD8α BV711 (53–6.7) from BD Biosciences. Flow cytometry was performed using a FACS LSRII-UV (BD Biosciences) and data were analysed with the FlowJo_v9.9.4 software.
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10

Multicolor Flow Cytometry Analysis

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The antibodies used for all experiments included CD11b-APCCy7 (#101226), Ly6G-PECy7 (#127618), CD3-APCCy7 (#100330), F4/80-APC (#123116), CD206-PE (#141706), MHCII-PE (#107647), MHCII-PECy7 (#107629), CD11c-APC (#117309), CD86-PECy7 (#105014) from Biolegend (Biolegend, San Diego, California, USA) and Ly6C-APC (#560595) from BD (BD Biosciences, UK). BD FACSDiva Software (Becton Dickinson) was used to acquire data. Analysis of data involved postacquisition gating using FlowJo software (Tree Star: Ashland, Oregon, USA).
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