The largest database of trusted experimental protocols

5 protocols using 1260 infinity ri detector

1

Analytical methods for fermentation process

Check if the same lab product or an alternative is used in the 5 most similar protocols
Biomass growth was controlled by optical density (OD600) measurement at 600 nm (BioSpectrophotometer, Eppendorf, Hamburg, Germany). The concentration of glycerol and methanol in the cell-free supernatant during the fermentation was determined by HPLC (Agilent Technologies 1220 Infinity LC System with Agilent Technologies 1260 Infinity RI detector, Agilent Technologies, Santa Clara, CA, USA) using a WATREX Polymer IEX H form column and guard column. A flow rate of 0.8 mL/min of 9 mM sulfuric acid at 45 °C was used [38 (link)]. Sinigrin concentration was determined by HPLC (Agilent 1260 Infinity LC System with Quaternary Pump and UV detector, Agilent Technologies, Santa Clara, CA, USA) using a Phenomenex Gemini® NX 5μm C18 110Å (150 × 4.6 mm) column according to Tsao et al. [39 (link)]. The nano-liquid chromatography and mass spectrometry analysis (LC-MS-MS) of the tryptic digest of myrosinase (myr-Δ19) was modified from [23 (link)]. The detailed method description can be found in Supplementary Materials. Protein concentration in cell-free supernatants was determined using the Bradford method [40 (link)]. Bradford reagent was purchased from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
2

Analysis of Organic Compounds by HPLC and GC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Glucose and organic acids were analysed by high-performance liquid chromatography (HPLC) on an Agilent 1290 LC II system, equipped with an Agilent 1290 Infinity Binary Pump, Agilent 1290 Infinity Autosampler, Agilent 1290 Infinity diode array detector operated at 210 nm, and an Agilent 1260 Infinity RI detector operated at 45 °C. Either an Aminex HPX-87H (Bio-Rad) or an Rezex ROA-Organic Acid H + (Phenomenex) column was used with a mobile phase of 0.008 mM H2SO4. The HPLC was operated at 0.8 mL/min and 60 °C. Propionic acid (50 mM) was used as internal standard.
Ethyl acetate and ethanol in liquid samples were measured by an Agilent 7890B gas chromatograph equipped with a flame ionisation detector (GC-FID) and an Agilent 7693 autosampler. Samples were analysed by injecting 0.5 μL of liquid sample onto a Nukol™ column (30 m × 0.53 mm, 1.0 μm coating, Supelco). The column temperature was maintained at 50 °C for 2 min and increased to 200 °C at a rate of 50 °C/min. The split ratio was 10. 1-Butanol (2 mM) was used as the internal standard.
+ Open protocol
+ Expand
3

Biomass growth and metabolite analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Biomass growth was controlled by optical density (OD600) measurement at 600 nm (BioSpectrophotometer, Eppendorf, Germany). A calibration curve was then used to calculate the dry cell weight (DCW): DCW (g/L) = 0.2001 × OD600 + 0.1075 [21 (link)].
The concentration of glycerol and methanol during fermentation was determined in the cell-free supernatant by HPLC (Agilent Technologies 1220 Infinity LC System with Agilent Technologies 1260 Infinity RI detector, Agilent Technologies, Santa Clara, CA, USA) using WATREX Polymer IEX H form 8 μm (250 × 8 mm column) and WATREX Polymer IEX H form 8 μm (40 × 8 mm guard column). A flow rate of 0.8 mL/min of 9 mM sulfuric acid at 45 °C was used.
The Sinigrin concentration was determined by HPLC (Agilent 1260 Infinity LC System with Quaternary Pump and UV detector, Agilent Technologies, Santa Clara, CA, USA) according to Tsao et al. [42 (link)]. A Phenomenex Gemini® NX 5μm C18 110Å (150 × 4.6 mm) was used at 30 °C. Sinigrin was purchased from Sigma-Aldrich (Saint-Louis, MO, USA).
The protein concentration in cell-free supernatants was determined by the Bradford method [43 (link)]. The Bradford reagent was purchased from Sigma-Aldrich (Saint-Louis, MO, USA).
+ Open protocol
+ Expand
4

Biomass and Protein Expression Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Biomass growth was measured spectrophotometrically (BioSpectrophotometer, Eppendorf, Hamburg, Germany) at 600 nm. Dry cell weight (DCW) was calculated from the correlation y (DCW in g/L) = 0.2001 × (OD600) + 0,1075 obtained experimentally for this strain. The level of expressed proteins was analyzed by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) followed by bromophenol blue staining and also by the Bradford method (Bradford, 1976 (link)). After fermentation, the culture was centrifuged and the supernatant was filtered through a non-pyrogenic sterile filter (Filtropur S 0.2 μm, Sarstedt).
The amounts of glycerol and methanol were measured by HPLC with an Agilent Technologies 1220 Infinity LC apparatus with an Agilent Technologies 1260 Infinity RI detector (Agilent Technologies, Germany). The column was a WATREX Polymer IEX H form 8 μm, 250 × 8 mm and the guard column was a WATREX Polymer IEX H form 8 μm, 40 × 8 mm, at a flow rate of 0.8 mL/min of 9 mM sulfuric acid at 45°C.
+ Open protocol
+ Expand
5

HPLC and GC Analysis of Glycerol, Methanol, and Imine

Check if the same lab product or an alternative is used in the 5 most similar protocols
Glycerol and methanol concentrations were measured by HPLC with an Agilent Technologies 1220 Infinity LC apparatus with an Agilent Technologies 1260 Infinity RI detector (Agilent Technologies, Germany), using a WATREX Polymer IEX H form 8 μm, 250×8 mm as the main column and a WATREX Polymer IEX H form 8 μm, 40x8 mm as a guard column, at a flow rate of 0.8 ml/min of 9 mM sulphuric acid at 45°C. Imine concentration was measured using the GC Agilent Technologies 6890N Network GC System (column: CAM 0.25 μm, 30 m x 0.32 mm, 1.6 ml/min of hydrogen as carrier gas with pressure 34.9 kPa, temperature profile of 110°C for 4.2 min, and a gradient of 30°C/min until 200°C). The total time was eight minutes and at the end, the temperature was cooled to 100°C.
The volume of injection was 1 μl with split 1:50.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!