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5 protocols using anti junb

1

ChIP-seq protocol for histone modifications

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ChIP was performed as described (Gal-Yam et al., 2008 (link)). Approximately 100 μg of chromatin isolated from 107 Karpas-299 or SU-DHL-1 cells were incubated with 50 μL of Dynabeads proteinG (Life Technologies) for 1 hr at 4°C and then with 10 μg of anti-JUNB (Santa Cruz, sc-73X) or 1 μg of anti-histone H3 (Abcam, ab1791), anti-H3K4me3 (Abcam, ab8580), anti-H3K9me3 (Abcam, ab8898), anti-H3K27me3 (Abcam, ab6002), or control immunoglobulin G (IgG) (Santa Cruz, sc-2027) overnight. Bound chromatin was washed, eluted, and de-cross-linked, and DNA was isolated by phenol-chloroform extraction after protein digestion. Primer sequences are listed in the Supplemental Experimental Procedures.
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2

Culturing Kidney Cell Lines for Experiments

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The human kidney carcinoma cell line, 786-O, and the human embryonic kidney cell line, 293T, were purchased from American Type Culture Collection (ATCC). Cells were cultured in RPMI-1640 medium (Genepharma, Shanghai, China) supplemented with 10% fetal bovine serum (Invitrogen) in 5% CO2 at 37°C. The primary antibodies anti-TGFBR1 and anti-JunB were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), and primary antibody anti-Actin was purchased from Beyotime Institute of Biotechnology (Jiangsu, China). Secondary antibodies anti-rabbit IgG and anti-mouse IgG were purchased from Beyotime and Santa Cruz, respectively.
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3

Whole cell extract and Western blotting

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Whole cell extracts and western blotting were performed as described (Lemasson and Nyborg, 2001 (link)). Antibodies used were as follows: anti-c-Jun (Cell Signaling Technology, 9165) and anti-HA (Sigma Aldrich, H3663); anti-Myc (05–724), anti-actin (MAB1501), anti-FLAG M2 (F3165) were purchased from Millipore-Sigma; anti-JunB (Santa Cruz Biotech, N-17, sc-46). All blots were developed using Pierce ECL Plus (ThermoFisher) and scanned with a Typhoon RGB imager (GE Healthcare). Quantification of c-Jun bands was performed using Image Quant TL 1D software (version 8.1; GE Healthcare), c-Jun band volumes were normalized to the corresponding actin band volumes. The western blots shown are representative data from experiments performed at least twice.
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4

Comprehensive Flow Cytometry and ChIP Analysis

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For flow cytometry analysis, the following antibodies were used at a 1:100 dilution: anti-CD3 (17A2; Biolegend), anti-CD4 (GK1.5; Biolegend), anti-CD25 (PC61; Biolegend), anti-CD44 (IM7; Biolegend), anti-CD62L (MEL-14; Biolegend), anti-CD45.1 (A20; Biolegend), anti-CD45.2 (104; Biolegend), anti-FasL (MFL3; Biolegend), anti-IL-17A (TC11-18H10.1; Biolegend), anti-IFN-γ (XMG1.2; Biolegend), anti-JunB (C-11; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-GATA3 (16E10A23; Biolegend), anti-ROR-γt (Q31-378; BD), anti-T-bet (4B10; Biolegend), and anti-rabbit IgG (Poly4064; Biolegend). For ChIP analyses, anti-JunB (1 μg per ChIP, 210; Santa Cruz), anti-BATF (1 μg per ChIP, WW8; Santa Cruz), anti-IRF4 (1 μg per ChIP, M-17; Santa Cruz) and rabbit IgG (1 μg per ChIP, I5006; Sigma) were used.
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5

ChIP-seq protocol for histone modifications

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ChIP was performed as described (Gal-Yam et al., 2008 (link)). Approximately 100 μg of chromatin isolated from 107 Karpas-299 or SU-DHL-1 cells were incubated with 50 μL of Dynabeads proteinG (Life Technologies) for 1 hr at 4°C and then with 10 μg of anti-JUNB (Santa Cruz, sc-73X) or 1 μg of anti-histone H3 (Abcam, ab1791), anti-H3K4me3 (Abcam, ab8580), anti-H3K9me3 (Abcam, ab8898), anti-H3K27me3 (Abcam, ab6002), or control immunoglobulin G (IgG) (Santa Cruz, sc-2027) overnight. Bound chromatin was washed, eluted, and de-cross-linked, and DNA was isolated by phenol-chloroform extraction after protein digestion. Primer sequences are listed in the Supplemental Experimental Procedures.
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