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5 protocols using sulfo cy5

1

Lanthanide Luminescence Measurements in Homogeneous Solutions

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Lanthanide luminescence in homogeneous solutions was measured with a Tecan Infinite M1000 Pro microtiter plate reader, using the instrument configurations described in Supplementary Table 3. Sulfo-Cy3 and Sulfo-Cy5 reagents were purchased from Lumiprobe; Atto 610 and sodium ascorbate from Sigma-Aldrich; and dNTPs from Life Technologies. To determine the lifetimes of LRET-mediated lanthanide luminescence, signal intensities were measured for a series of ‘time slices.’ Collection times were fixed at 100 µs, and the temporal delay was varied from 0 to 400 µs. The integrated signal intensities of these time slices were fitted to the equation below using MATLAB software (version R2015b).
y(t)=c×delaydelay+100et/τdt To compare the integrated signal intensities of Eu3+/ATBTA complexes in the absence and presence of 10 µM Atto 610 (i.e., integrated emission spectra from 0 µs after excitation to infinity), emission photons were collected for 2 ms (maximum collection time permitted by the instrument) after a delay of 30 µs. The measured signal intensities for this pulse cycle and average luminescence lifetimes (1020 and 17 µs in the absence and presence of Atto 610, respectively) were then used to calculate total photon emissions for each experimental condition.
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2

EdU Labeling of Proliferating Cells

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EdU staining was performed to label proliferating cells. To this end, pdx1 mutants and age-matched controls were injected intraperitoneally with 20 µg/g bodyweight EdU (5-ethynyl-20-deoxyuridine). Fish were sacrificed after two days, glucose was measured and eyes were fixed in 4% PFA and cryosectioned. EdU detection was performed according to manufacturer’s instruction using Click iT EdU Alexa 488 (C10337, Invitrogen, Waltham, MA, USA) or Sulfo-Cy5 (A3330, Lumiprobe, Hannover, Germany). Sections were then further processed for antibody staining and counterstained with DAPI.
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3

Purification and Labeling of Recombinant Proteins

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All chemicals used are from Sigma-Aldrich or TCI with the following exceptions: Buffer components and LB granulated media (Fisher). IPTG (Gold Bio, I12481), Ni-NTA resin (Qiagen, 30210), HiTrap Q HP anion exchange columns (GE Healthcare, 17115301), Sulfo-Cy5 (Lumiprobe, 63320), Alexa Fluor 555-NHS Ester (Invitrogen, A20009), SuperDex 200 SEC Column (Cytiva, 28-9909-44), ExpiFectamine 293 Transfection Kit (Gibco, A14525), HiTrap Chelating HP column (Cytiva, 17040801), Sephacryl S-400-HR (17060910).
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4

Lanthanide Luminescence Measurements in Homogeneous Solutions

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Lanthanide luminescence in homogeneous solutions was measured with a Tecan Infinite M1000 Pro microtiter plate reader, using the instrument configurations described in Supplementary Table 3. Sulfo-Cy3 and Sulfo-Cy5 reagents were purchased from Lumiprobe; Atto 610 and sodium ascorbate from Sigma-Aldrich; and dNTPs from Life Technologies. To determine the lifetimes of LRET-mediated lanthanide luminescence, signal intensities were measured for a series of ‘time slices.’ Collection times were fixed at 100 µs, and the temporal delay was varied from 0 to 400 µs. The integrated signal intensities of these time slices were fitted to the equation below using MATLAB software (version R2015b).
y(t)=c×delaydelay+100et/τdt To compare the integrated signal intensities of Eu3+/ATBTA complexes in the absence and presence of 10 µM Atto 610 (i.e., integrated emission spectra from 0 µs after excitation to infinity), emission photons were collected for 2 ms (maximum collection time permitted by the instrument) after a delay of 30 µs. The measured signal intensities for this pulse cycle and average luminescence lifetimes (1020 and 17 µs in the absence and presence of Atto 610, respectively) were then used to calculate total photon emissions for each experimental condition.
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5

Maleimide Labeling Quenching Protocol

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Abberior STAR 635P maleimide was purchased from Abberior (Germany). Alexa Fluor 488 C5 maleimide, Alexa Fluor 568 C5 maleimide, Alexa Fluor 594 C5 maleimide, Alexa Fluor 647 C2 maleimide, DyLight405 maleimide, DyLight488 maleimide, Oregon Green 488 maleimide, and SYPRO orange were purchased from ThermoFisher Scientific (Germany). Atto488, Atto647N, and Atto565 maleimides were purchased from ATTO-TEC (Germany). Cy3, Sulfo-Cy3, Cy5, and Sulfo-Cy5 maleimides were purchased from Lumiprobe (Germany). All maleimides were incubated with a 10× excess molar ratio of l-cysteine for 1 h for quenching before the FG phase permeation assays. DAPI, Hoechst 33342, Hoechst 33258, Hoechst 34580, Oxazole yellow, Ethidium bromide, Fluorescein, Rhodamine B, and Thioflavin-T (ThT) were purchased from Sigma-Aldrich (Germany). Nuclear yellow was purchased from Abcam (Netherlands).
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