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4 protocols using anti pchk2 t68

1

Western Blot Analysis of Signaling Proteins

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Cells were lysed in the RIPA buffer (P89901, Thermo Scientific) supplemented with protease inhibitors (P1862209, Thermo Scientific). The protein concentration was detected using a BCA protein assay kit (Thermo Scientific). For western blot, 40 μg protein was separated by 8% SDS-PAGE gels and blotted onto a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA). The membranes were incubated with the following specific antibodies: anti-pEGFR (tyr1038), anti-Akt, anti-pAkt (Ser 473), anti-pMET (Y1234/1235), anti-ERK, anti-pERK (T202/Y204), anti-PDGFRβ, anti-ATM, anti-53BP1, anti-pH2AX (S139), anti-pChk2 (T68), and anti-Chk2 (Cell Signaling Technology, Danvers, MA); and anti-EGFR, anti-Met (C-12) (Santa Cruz Biotechnology, Santa Cruz, CA), and anti-GAPDH (Sigma-Aldrich, St. Louis, MO); then, a secondary horseradish peroxidase (HRP)-conjugate antibody was used for immunodetection. The protein bands were visualized using an ECL western blotting kit (Millipore, Bedford, MA) and densitometry analysis with AlphaEaseFC software.
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2

Immunoprecipitation Protocol for CDC73, ATR, RNAPII

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For immunoprecipitations, cells were lyzed in TX-100 buffer (see under western blotting) containing 100 U/ml Benzonase (Sigma-Aldrich). Lysates were precleared and anti-CDC73 (Bethyl) or anti-pATR T1989 (GeneTex) or anti-RNAPII (F-12, Santa Cruz Biotechnologies) or anti-pCHK2 T68 (used as control antibody, from Cell Signaling) were added. Dynabeads (protein G; Life technologies) were used to isolate antibody-bound complexes.
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3

Immunoblotting for DNA Damage Response

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Antibodies were obtained from the following commercial sources: anti-H2AxSer139 (Millipore; clone JBW301), anti-P53BP1Ser25 (Novus Biologicals; NB100-1803), anti-53BP1 (ThermoFisher Scientific; PA1-16565), anti-pChk1S345, anti-pChk2T68, anti-Chk1, anti-Chk2, anti-ATM (Cell Signaling Technology; 2348S, 2661S, 2G1D5, 1C12 and D2E2 respectively), anti-pATMS1981 (Rockland, NC9306342), anti-β-actin (Life Technologies, clone AC-15) and anti-vinculin (Abcam, clone ab18058).
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4

Chk1/Chk2 Signaling Pathway Analysis

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Cells were collected using a scraper, washed with PBS and resuspended in lysis buffer (25 mM Tris-HCl pH 7.5, 150 mM NaCl, 1% NP-40, 1 mM EDTA, 1 mM EGTA) containing protease and phosphatase inhibitor cocktail (Roche Molecular Biochemicals). The following antibodies with corresponding concentrations were used: anti-PAR (Trevigen, 1:1000), anti-Chk2 (EMD Millipore, 1:1000), anti-pChk2-T68 (Cell Signaling, 1:1000), anti-Chk1 (Santa Cruz, 1:750), anti-pChk1-S345 (Cell Signaling, 1:1000), anti-pKAP1-S824 (Bethyl Laboratories, 1:2000), anti-Cas9 (Cell Signaling Technology, 1:1000), anti-Clathrin Heavy Chain (BD Transduction Laboratories, 1:10 000) and anti-Tubulin (Sigma, 1:10 000).
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