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7 protocols using cy3 labeled goat anti mouse igg

1

Spinal Cord Injury Neuronal Apoptosis Assay

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Neuronal apoptosis in the spinal cord at 7 days after SCI was measured by performing terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) and NeuN co-staining in spinal cord sections. After permeabilization with Triton X-100 (0.1%,) at room temperature for 8 minutes, the sections were treated with TUNEL reaction solution (Roche, Basel, Switzerland) for 1 hour, blocked in 1% bovine serum albumin (Sangon Biotech, Shanghai, China) for 1 hour, and then treated with primary antibody against NeuN (mice, 1:200; Abcam, Cambridge, MA, UK; Cat# ab104224; RRID: AB_10711040) overnight at 4°C. After washing, the sections were treated with Cy3-labeled goat anti-mouse IgG (1:200; Thermo Fisher Scientific; Cat# A-21424; RRID: AB_141780) for 1 hour at room temperature (20 ± 2°C). The nuclei were stained with 4’,6-diamidino-2-phenylindole (Aladdin, Shanghai, China). Images were observed under a fluorescence microscope (400×, Olympus).
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2

Antibodies for ER Stress Pathway Analysis

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Thapsigargin (Tg), mouse monoclonal anti-Flag M2 antibody, rabbit polyclonal anti-LC3B antibody, rabbit polyclonal anti-p62/SQSTM1 antibody, and mouse monoclonal anti-actin antibody were purchased from Sigma-Aldrich. Mouse monoclonal antibodies against GRP78, GRP94, ATF6, ATF4, Beclin-1, PERK, phospho-PERK, eIF2α, and phospho-eIF2α were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit polyclonal IRE 1 and phospho-IRE 1 were purchased from Abcam (Cambridge, MA, USA). Horseradish peroxidase (HRP)-conjugated goat anti-rabbit or -mouse secondary antibody was purchased from Jackson ImmunoResearch (West Grove, PA, USA). Alexa Fluor 594-labeled donkey anti-goat IgG was purchased from Life Technologies (Carlsbad, CA, USA). 4′,6′-diamidino-2-phenylindole (DAPI) and Cy3-labeled goat anti-mouse IgG were purchased from Thermo Scientific (Waltham, MA, USA).
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3

Immunodetection of TMED10 and NeuN in Brain Tissue

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The brain tissue was embedded in paraffin and prepared into the 5 µm-thick sections. And immunofluorescence staining was performed using anti-TMED10 (dilution rate 1: 100,
Abclonal, Wuhan, China) and anti-NeuN (dilution rate 1:200, Abcam, Cambridge, UK) at 4°C overnight. After washing by PBS, cells were incubated in the secondary antibodies FITC labeled goat
anti-rabbit IgG (dilution rate 1:200, Abcam) and CY3 labeled goat anti-mouse IgG (dilution rate 1:200, Invitrogen, Carlsbad, CA, USA) at room temperature for 90 min. The nuclei were then
stained with DAPI (Aladdin, Shanghai, China). Finally, after cells were covered by the anti-fluorescence quenching agent (Solarbio), the photos of cells were taken under a microscope.
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4

Immunofluorescence Staining Protocol for Tissue Analysis

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Immunofluorescence (IF) staining was constructed by the method described in many studies. The tissue was embedded in paraffin and cut into 5-µm sections beforehand. All slides were deparaffinized, rehydrated in xylene, 100%, 95%, 85%, 75% ethanol, and PBS, and constantly stained with 10% antigen retrieval solution for 10 min. BSA (1%, Sangon) as the blocking buffer was incubated at room temperature for 15 min. The primary antibody was added and incubated at 4°C overnight. Then, the secondary antibody, and 4′,6-diamidino-2-phenylindole (DAPI) (Aladdin) were added to this procedure. The antibodies used in this section involved as follows: NF-κB p-p65 antibody (1:200, Affinity, Jiangsu, China), CD68 (1:50, Santa Cruz, Santa Cruz, CA, USA), iNOS (1:100, ABclonal), Cy3 labeled goat anti-mouse IgG (1:200, Invitrogen, Carlsbad, CA, USA), Cy3 labeled goat anti-rabbit IgG (1:200, Invitrogen), FITC labeled goat anti-mouse IgG (1:200, Abcam, Cambridge, UK). The immunofluorescence images were taken and preserved using an OLYMPUS-BX53 microscope (OLYMPUS, Tokyo, Japan).
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5

Immunofluorescent Analysis of S100P

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Cell monolayers cultured in 96-well dishes or on coverslips were fixed with 4% paraformaldehyde. After permeabilization with 0.1% Triton X-100 for 45 min, cells were incubated with 1:50 mouse anti-human S100P monoclonal antibody (R&D Systems, Minneapolis, MN, USA) as the primary antibody, and then incubated with 1:500 Cy3-labeled goat anti-mouse IgG (Invitrogen) as the secondary antibody. Alternatively, the cells were stained with 5 μg/ml FITC-phalloidin (Sigma) for F-actin staining. Cell nuclei were counterstained with Hoechst33258 stain (Sigma) at 1 mg/ml. The cells were then observed under a fluorescence microscope (Axiovert 200, Zeiss, Jena, Germany).
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6

Neuronal Apoptosis Detection Protocol

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The primary neurons were treated by 200 µl 0.1% Triton X-100 (Beyotime) with 0.1% sodium citrate at room temperature for 15 min. The TUNEL reaction solution was prepared by
the enzyme solution and label solution in the In Situ Cell Death Detection Kit (Red) (Roche, Basel, Switzerland) according to 1:9, then added into the cell plate and incubated at 37°C for 60
min in the dark environment. Cells were photographed under a microscope after the nuclei was stained with DAPI (Aladdin).
TUNEL combined with IF was used to detect neuronal apoptosis. Neurons are located by the primary antibody NeuN (dilution rate 1:200, Abcam) and secondary antibody CY3 labeled goat
anti-mouse IgG (dilution rate 1:200, Invitrogen). In Situ Cell Death Detection Kit (Green) (Roche) was used to detect apoptosis.
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7

Immunohistochemical Analysis of Brain and Microglial Cells

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Brain tissue was embedded in paraffin and then sectioned. BV2 microglial cells were washed with phosphate buffered saline (PBS) and fixed with 4% buffered paraformaldehyde (Sinopharm). Brain tissue and cells were then incubated overnight at 4°C with primary antibodies: FERMT1 (1:100 dilution; 22215-1-AP; proteintech, Hubei, China), ionized calcium binding adapter molecule 1 (Iba1; 1:50 dilution; Sc-32725; Santa, Shanghai, China) and NF-κB p65 (1:100 dilution; A19653; ABclonal, Hubei, China). Secondary antibodies were added and incubated for 1 h at room temperature. Secondary antibody: FITC-labeled goat anti-rabbit IgG (1:200 dilution; ab6717; Abcam, Cambridge, MA, USA), Cy3-labeled goat anti-mouse IgG (1:200 dilution; A-21424; Invitrogen) and Cy3-labeled goat anti-rabbit IgG (1:200 dilution; A27039; Invitrogen). Finally, nuclei were stained with DAPI (D106471-5mg, Aladdin). Tissue and cells were observed under an inverted fluorescence microscope (Olympus).
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