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64 protocols using anti p smad2

1

Western Blot Analysis of Fibrosis Markers

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Cells were lysed in buffer (20 mM Tris-HCl pH 8, 150 mM NaCl) containing a protease inhibitor. Protein concentrations were determined using a BCA Protein Assay Kit. A total of 20–30 μg of proteins were separated using 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to a nitrocellulose membrane. The membrane was blocked with 5% (w/v) non-fat milk in Tris-buffered saline with 20% TWEEN-20 (TBS-T). Membranes were then incubated in primary antibodies overnight: anti-TGF-β1 (Santa Cruz Biotechnology), Anti-α-SMA (Sigma-Aldrich), Anti-collagen I (Santa Cruz Biotechnology), Anti-fibronectin (Abcam), Anti-iNOS (Abcam), Anti-IL-10 (Santa Cruz Biotechnology), Anti-p-Smad2 (Cell Signaling Technology), Anti-Smad2 (Santa Cruz Biotechnology), Anti-p-Smad3 (Cell Signaling Technology), Anti-Smad3 (Santa Cruz Biotechnology), Anti-Smad7 (Santa Cruz Biotechnology), and Anti-p-NF-κB, Anti-NF-κB, Anti-p-IκBα, Anti-IκBα (Cell Signaling Technology). After incubation, anti-rabbit IgG and anti-goat IgG (Santa Cruz Biotechnology) were used to detect proteins. The membranes were visualized using an enhanced chemiluminescence detection (ECL) kit (Amersham Pharmacia Biotech, Piscataway, NJ, United States). Densitometric analysis was performed using ImageJ software1.
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2

Western Blot Analysis of ECM Proteins

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After tissues were homogenized in liquid nitrogen, the homogenate was lysed on ice for 30 min in lysis buffer (BioTeKe, Beijing, China). The lysates (20–40 μg) of total protein were loaded per well and separated on a 10% SDS-polyacrylamide gel. Primary antibodies were anti-CTGF (1:5000 dilution, Abcam, Shanghai, China), anti-collagen-II (1:5000 dilution, Abcam), anti-collagen-IV (1:5000 dilution, Abcam), anti-Smad 2/3 (1:1000 dilution, Cell Signaling Technology, Boston, MA), anti-Smad 7 (1:1000 dilution, Santa Cruz Biotech, Santa Cruz, CA), anti-p-Smad2 (1:1000 dilution, Cell Signaling Technology), and anti-actin antibodies (1:5000 dilution, Santa Cruz Biotech). The secondary antibody was a peroxidase-coupled anti-goat IgG (GE Healthcare). The membrane was exposed to ECL Hyperfilm (GE Healthcare), and the film was developed. The bands were quantified by densitometry using ImageJ. Results were from triplicate experiments.
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3

TGF-β1 Pathway Regulation Assay

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PMA was obtained from Sigma (P1585). Anti-COX-2 and anti-CD68 antibodies were purchased from R&D Systems (AF4198 and MAB20401). Rabbit polyclonal anti-RGC-32 antibody was purchased from Biorbyt (orb2372). Anti-smad2 and anti-p-smad2 were purchased from Cell Signaling Technology (5339 and 18338). TGF-β1 neutralizing antibody (NAb) was obtained from R&D Systems (MAB240) and used at 2.5 μg/ml.
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4

Western Blotting of EMT Markers

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Western blotting was carried out as previously described [27 (link)]. The primary antibodies used were anti-N-Cadherin (BD Biosciences, Breda, Netherlands #610920), anti-α-Smooth Muscle Actin (Sigma, Zwijndrecht, Netherlands #A2547), anti-Snail (Cell Signaling, Leiden, Netherlands #3879), anti-Smad2 (BD Biosciences, Breda, Netherlands #610842), anti-p-Smad2 (Cell Signaling, Leiden, Netherlands #3108), anti-Smad4 (Santa Cruz #sc7966), anti-TGFβRI (Santa Cruz, Heidelberg, Germany #sc 398), anti-TGFβRII (Santa Cruz, Heidelberg, Germany #sc-400), anti-Smad3 (Epitomics, Duiven, Netherlands #1735–1), anti-p-Smad3 (a kind gift from Dr Edward B Leof, Mayo Clinic, Rochester, Minnesota) and anti-β-actin (Sigma, Zwijndrecht, Netherlands #A5441). All the secondary antibodies were from Sigma, Zwijndrecht, Netherlands. Western quantification was performed using image J software.
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5

Western Blot Analysis of Cell Signaling

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Western blot analysis was performed according to a standard protocol.44 (link) The primary antibodies included anti-ACP5 (Gentex, CA, USA, 1:1,000), anti-fibronectin, anti-E-cadherin, anti-vimentin (Proteintech, Wuhan, China, 1:1,000), anti-p38, anti-ERK, anti-p-ERK, anti-AKT, anti-β-catenin, anti-SMAD2/3, anti-p-SMAD2, anti-p-SMAD3, anti-p53, anti-p53 (Ser392), anti-ubiquitin (Cell Signaling Technology, Danvers, MA, USA, 1:1,000), anti-GAPDH, and anti-β-actin (Abcam, Cambridge, MA, USA, 1:3,000) antibodies. Detection was performed using a chemiluminescent substrate system (Bio-Rad, Hercules, CA, USA). The gray values were analyzed with ImageJ software.
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6

Immunofluorescence Imaging and Time-Lapse Analysis of Stem Cell Markers

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Cells were fixed for 10 min at 4°C in 4% paraformaldehyde in PBS, permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, St. Louis, MO) for 10 min at room temperature, and blocked for 1 hour in PBS with 1% horse serum (Sigma-Aldrich, St. Louis, MO). The primary antibodies used were as follows: anti-NANOG (1:400; cat. no. 4903, Cell Signaling), anti-SOX17 (1:100; cat. no. 81778, Cell Signaling), anti-FOXA2 (1:100; cat. no. 685802, BioLegend), anti-SMAD2 (1:100; cat. no. 3122, Cell Signaling), anti-SMAD3 (1:100; cat. no. 9523, Cell Signaling), anti–p-SMAD2 (1:100; cat. no. 3108, Cell Signaling), and anti–p-SMAD3 (1:100; cat. no. 9520, Cell Signaling). The treated cells were subjected to three washes with PBS and further incubation with Alexa Fluor secondary antibodies (1:500; Jackson ImmunoResearch) for 1 hour at room temperature in the dark. The cells were then washed three times with PBS, with 4′,6-diamidino-2-phenylindole (Sigma-Aldrich, St. Louis, MO) added to the first wash to stain the nuclei. Images were acquired using a Confocal Zeiss LSM880. Intensity analysis was performed using ImageJ 1.51j8 (National Institutes of Health, MD, USA). For time-lapse imaging, cells were placed on an inverted microscope (Nikon, Ti-U inverted microscope system) and recorded every 2 hours for 72 hours in an environmental chamber maintained at 37°C with 5% CO2.
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7

Antibody Characterization for TGF-β Signaling

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The following antibodies were used in the present study: anti-TRIM25, anti-actin, anti-TGF-β and anti-bone morphogenetic protein (BMP)-4 and purchased from Abcam (Cambridge, MA, U.S.A.). Anti-p-Smad2, anti-Smad2, anti-p-Smad4, anti-Smad4, and anti-tubulin were purchased from Cell Signaling Technology (Danvers, MA, U.S.A.).
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8

Curcumin Modulates Snail-Mediated EMT

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Curcumin was purchased from Sigma–Aldrich (Deisenhofen, Germany). pGL3-Snail was a gift from Sun Yat-sen University, pRL-TK and dual-luciferase assay kit are products of Promega (Madison, WI, USA). The monoclonal anti-Snail, an-Smad2, anti-p-Smad2, anti-E-cadherin, anti-fibronectin, anti-GAPDH, anti-Vimentin antibody, and the secondary anti-mouse antibody conjugated to HRP are products of Cell Signaling Technology (MA, USA). Millicell chamber (8 μm) was purchased from Millipore (BD Biosciences, USA). SYBR Premix Ex Taq II is a product of TaKaRa BIO Inc (TBI, Japan). The secondary anti-mouse antibody conjugated to FITC and DAPI dye were purchased from Invitrogen (Carlsbad, CA, USA).
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9

Immunoblotting Analysis of Xenograft Samples

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Total cell lysates extracted from the xenografts and cell lines were separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis and transferred to a polyvinylidene difluoride membrane for immunoblotting as described41 (link). Primary antibodies used in this study were anti-TGFBR2 (diluted 1:1000, clone D-2, sc-17799, Santa Cruz, USA), anti-SMAD2 (diluted 1:1000, clone D43B4, 5339, Cell Signaling, USA), anti-pSMAD2 (diluted 1:1000, clone 138D4, 3108 Cell Signaling, USA), anti-SMAD3 (diluted 1:1000, clone C67H9, 9523, Cell Signaling, USA), anti-pSMAD3 (diluted 1:1000, clone C25A9, 9520, Cell Signaling, USA), anti-Involucrin (diluted 1:1000, clone SY5, MA5-11803, Invitrogen, USA) anti-MTAP (diluted 1:1000, 4158 S, Cell Signaling, USA), anti-PRMT5 (diluted 1:1000, 2252 S, Cell Signaling, USA), anti-MAT2A(diluted 1:10000, clone B-10, Sc-166452, Santa Cruz, USA), anti-SDMA (diluted 1:1000, 13222 S, Cell Signaling, USA), anti-Caspase-3 (Asp175)(diluted 1:1000, clone 5A1E, 9664, Cell Signaling, USA), anti-BAX (diluted: 1000, 2772, Cell Signaling, USA), anti-p53 (diluted 1:1000, clone DO-1, Sc-126, Santa Cruz, USA), anti-Actin (diluted 1:100000, clone13E5, 4967, Cell Signaling, USA).
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10

Protein Expression and TGF-β1 Secretion Analysis

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Whole cell extracts were prepared using RIPA buffer, resolved on SDS-PAGE gels, and transferred to acetate cellulose membranes. Primary antibodies used were anti-TAGLN (1:1000, Abcam plc.), anti-MYH11 (1:500, Abcam plc.), anti-ACTA2 (1:200, Sigma Corp.), anti-CNN1 (1:500, Sigma Corp.), anti-pSMAD2 (1:500, Cell Signaling Technology Inc.), anti-pS6 (1:500, Cell Signaling Technology Inc.), anti-GAPDH (1:2000, Santa Cruz Inc.). Secondary antibodies used were IRDye680RD Donkey anti-Mouse, IRDye680LT Donkey anti-Rabbit, IRDye800CW Donkey anti-Mouse, IRDye800CW Donkey anti-Rabbit (All secondary antibodies were from Licor Inc.). Licor western blot detection system was used for the dual-color imaging. ImageJ was used for the quantification of bands.
For the ELISA assay of the secreted TGF-β1, fresh medium (DMEM/F12, N2, Pen/Strep, all from Life technologies Corp.) without serum was applied to the cells and harvested after 24 h. ELISA assay was carried out using the Human TGF-beta 1 Quantikine ELISA Kit from R&D systems following the manufacture's guidelines.
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