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920 protocols using originpro 9

1

Statistical Analysis of Bael Genotypes

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The data collected for various characteristics were grouped and subjected to statistical analysis. Descriptive statistics, including minimum and maximum values, mean, standard error (SEM), standard deviation (SD), skewness, kurtosis and coefficient of variation (CV%) were computed for the measured traits. The variance for all the characteristics was assessed using statistical analysis software [15 ]. Correlations between the traits were determined by pearson correlation coefficients with OriginPro 9.1 software. Relationships between the genotypes were investigated by principal component analysis (PCA) with OriginPro 9.1 software. For cluster analysis, a distance matrix was generated from the phenotypic data and analyzed using the Ward method to better understand the variability patterns among the bael genotypes using OriginPro 9.1 software. In addition, a scatter plot was created according to the PC1 and PC2 using OriginPro 9.1 software.
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2

Standardized Statistical Analysis of Biological Data

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All of the data are expressed as mean values ± SEM, with n indicating the number of experiments. We used OriginPro 9.1 to test normality of data such as cumBD and FSH. Moreover, for statistical significance among cumBD and FSH distributions from different experiments, we used the non-parametric tests Wilcoxon signed rank test or Kruskal–Wallis test both available from OriginPro 9.1. The data were analyzed and the figures prepared using OriginPro 7.0 or OriginPro 9.1 software.
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3

Nanoparticle Behavior in Seawater and Mice

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Differences in hydrodynamic diameter and zeta potential of nTiO2 in seawater at different pH levels (pH 8.1, 7.8, and 7.4) were compared by one-way analyses of variance (One-way ANOVAs) followed by post-hoc Tukey tests using OriginPro 9.0.
The nTiO2 concentrations accumulated in individuals were assessed using a linear mixed effects model with treatment pH as a fixed factor and the treatment tank as a random factor. In total, nine linear mixed effects models were performed for each tissue and species investigated (3 species × 3 tissues) using ‘R’ statistical package lme4 (R Development Core Team, 2012).
Differences in hematologic indices and blood chemistry values of the mice after oral exposure to different nTiO2 doses were evaluated using one-way ANOVAs followed by post-hoc Tukey tests using OriginPro 9.0. Percentage data (e.g. percentages of monocytes, granulocytes and lymphocytes) were arcsine-square root transformed prior to analysis to meet the assumption of a normal distribution71 .
For all analyses, Levene’s test and Shapiro-Wilk’s test were performed using OriginPro 9.0 to verify homogeneity of variance and normality, respectively. All data were presented as mean ± standard error (SE) and a p-value at p < 0.05 was taken as statistically significant.
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4

Tracking Centrosome Dynamics in 3D

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Means ±
standard deviations presented herein were obtained by comparing at
least three independently performed experiments. Student’s t-tests, as indicated in the figure legends, were performed
to evaluate statistical differences between two groups, as indicated
in the Figures. P-values ≥ 0.05 were considered nonsignificant.
The 3D Euclidean distances between centrosomes were calculated
using Ace 3D, a visualization and analysis plugin for Fiji58 (link) that uses 3D Object Counter60 (link) to create multidimensional centroid maps for analysis (available
on request).
The 3D temporal evolution of spindle lengths (mean
distances between
centrosomes ± SD) was plotted against time using OriginPro 9.0.0.
The linear portion of the curves was selected by Data Selector tool
and fit by linear regressions utilizing the OriginPro 9.0.0 programming
environment with a least-squares fitting algorithm.
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5

Soil Properties and Fractal Dimension

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Data were analyzed using SPSS software version 21.0 (IBM Inc. NC, USA). The differences in selected soil physicochemical properties and D values among the MPPs were compared using multiple comparison and one-way analysis of variance. A least-significant difference test (at p < 0.05) was used to compare the means of soil variables. Pearson’s correlation coefficient and a two-tailed test were used to distinguish correlation (significantly correlated at p < 0.05 (0.05 level) and p < 0.01 (0.01 level)) and significant differences (at the 0.05 level and 0.01 level). Simple linear regression and correlation analysis were performed using OriginLab OriginPro 9.0 software (OriginLab Inc., Northampton, MA, USA) to identify the relationships between D and the selected soil properties and stand density (at the 0.05 level and 0.01 level). Data processing and plotting were also completed using OriginLab OriginPro 9.0 software.
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6

Bioactive Compounds Analysis of Juglans Berries

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The results were summarized as the mean values ± standard deviation (SD). The data were processed using Microsoft Excel 2016 and OriginPro 9.5 software (OriginLab Co., Northampton, MA, USA). The phytochemical data of the JB1 and JB2 extracts were compared pairwise using Student’s t-test (normal distribution, Kolmogorov–Smirnov and Shapiro–Wilk criteria, p > 0.05). Repeated measures using analysis of covariance (ANOVA) and Post-hoc Tukey test were used to examine the extraction yield and the main phytochemicals (total sugars, total phenolic compounds, total flavonoids, total terpenoids and ascorbic acid content) between berries of the 1st and 2nd year of maturity. Data analysis was performed using IBM SPSS 23.0 statistical software (Chicago, IL, USA). The level of p < 0.05 was considered statistically significant. Pearson correlations (p < 0.05) were used to identify correlations between phytochemicals and antioxidant activity of acetone, methanol and 70% ethanol extracts of JB1 and JB2.
The statistical processing of nematocidal activity results was performed using Fisher’s angular transformation. The regression analysis of calibration characteristics and the mathematical prediction of the peak area response for chromatographic analysis were performed using OriginPro 9.5 software (Origin Lab Corp, Northampton, MA, USA) and processed according to standards [94 ].
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7

Bioactive Compounds Analysis of Juglans Berries

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The results were summarized as the mean values ± standard deviation (SD). The data were processed using Microsoft Excel 2016 and OriginPro 9.5 software (OriginLab Co., Northampton, MA, USA). The phytochemical data of the JB1 and JB2 extracts were compared pairwise using Student’s t-test (normal distribution, Kolmogorov–Smirnov and Shapiro–Wilk criteria, p > 0.05). Repeated measures using analysis of covariance (ANOVA) and Post-hoc Tukey test were used to examine the extraction yield and the main phytochemicals (total sugars, total phenolic compounds, total flavonoids, total terpenoids and ascorbic acid content) between berries of the 1st and 2nd year of maturity. Data analysis was performed using IBM SPSS 23.0 statistical software (Chicago, IL, USA). The level of p < 0.05 was considered statistically significant. Pearson correlations (p < 0.05) were used to identify correlations between phytochemicals and antioxidant activity of acetone, methanol and 70% ethanol extracts of JB1 and JB2.
The statistical processing of nematocidal activity results was performed using Fisher’s angular transformation. The regression analysis of calibration characteristics and the mathematical prediction of the peak area response for chromatographic analysis were performed using OriginPro 9.5 software (Origin Lab Corp, Northampton, MA, USA) and processed according to standards [94 ].
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8

Kidney Cancer Diagnostic Biomarkers

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Samples sizes were calculated using the formula described in [32 (link)] assuming α and β values of 0.05 and 0.2, respectively. We used standard deviation obtained in our preliminary experiments and estimated 150% difference in means.
To evaluate the statistical significance of differences between groups we performed the nonparametric Mann-Whitney U test using the OriginPro 9.1 software (OriginLab, USA) or the Chi-square test (χ2) using Microsoft Excel 2007 in the case of categorical variables.
Differences were considered statistically significant if p < 0.05. To evaluate the discriminative power of the parameters studied for kidney cancer diagnostics we built binary logistic regression models for the selected predicting variables and all their possible combinations using SPSS version 22 (IBM, USA). From these models, the probabilities of positive outcome (i.e., cancer occurrence) were calculated. These probabilities were used for Receiver-operating characteristics (ROC) analysis. Building of ROC and evaluation of AUC (Area Under Curve) was performed using the GraphPad Prism 6.07 (GraphPad Software, La Jolla, CA, USA) or the OriginPro 9.1 software (OriginLab, USA).
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9

Quantitative AFM Image Analysis

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Analysis of the AFM images and FCs was done in the JPK Data Processing software (Version spm-5.1.4), which enabled automated detection and processing of jumps and plateaus. Following this, only those isolated, individual jumps and plateaus not convoluted by other interactions were considered for analysis of the forces and rupture lengths. Histograms of the force distributions were plotted and primarily fitted to either Lorenzian or Lognormal functions using OriginPro 9.1 to extract the peak distribution values. Histograms were prepared using the same bin size and peak distribution values obtained from the fitting. ANOVA and post-hoc Tukey were performed using statistical packages of OriginPro 9.1 and Igor Pro (Wavemetrics). To quantify the cell modulus, we fitted the contact region of the approaching curves to the Hertz model using the JPK Data Processing software.
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10

Statistical Analysis of Quantitative Data

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All quantitative data were analyzed and graphed using OriginPro 9.1 software. All data are represented as mean ± SD calculated using the OriginPro 9.1 software, unless indicated otherwise. Statistical details of the experiments are provided in the respective figure legends and in each methods section pertaining to the specific technique applied.
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