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89 protocols using laminin

1

Immunofluorescence Staining of Tissue Sections

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OCT compound was removed from cryosections by washing for 15 min in phosphate-buffered saline (PBS) at 37°C. Sections were then blocked with 10% (v/v) goat serum, 1% (w/v) bovine serum albumin in PBS containing 0.1% (v/v) Triton X-100 for 1 h at room temperature preceding primary antibody incubation. Primary antibodies were incubated in blocking solution for 2 h at room temperature at the following concentrations: PAX6 (Covance) 1:300, PAX2 (Lifespan Biosciences) 1:100, and Laminin (Abcam) 1:200; Triton X-100 was excluded from the blocking buffer for incubations with anti-Laminin. After several washes with PBS, sections were incubated with Goat anti-rabbit AlexaFluor594 (Life Technologies), 1:800 dilution, in blocking solution at room temperature for one hour, followed by a 1:3000 dilution of the nuclear dye 4′,6-diamidino-2-phenylindole, dihydrochloride (DAPI; Life Technologies) for 10 min at room temperature. Slides were mounted following several washes in PBS with Citifluor AF-1 mountant (Electron Microscopy Science).
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2

Laminin Immunofluorescence and Cell Staining

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For laminin immunofluorescent staining, SA fibrous scaffolds were blocked with 3 v/v % goat serum (Sigma-Aldrich) for 30 min, followed with primary antibody, laminin (1:1000; Abcam) for 1 h, and secondary antibodies (Alexa Fluor dyes; Thermo Fisher Scientific) for 30 min. For cell culture experiments, cells with scaffolds were fixed in 4 v/v % paraformaldehyde (Sigma-Aldrich) for 20 min, permeabilized with 0.2 v/v % Triton X-100 (Sigma-Aldrich) for 15 min, and blocked with 3 v/v % goat serum for 45 min. Cells were then incubated for 1.5 h with primary antibodies, nestin (1:500; Millipore, U.K.), βIII-tubulin (1:1000; Sigma-Aldrich), and Ki67 (1:1000; Abcam), followed with DAPI (Sigma-Aldrich) and secondary antibodies for 45 min. The stained samples were mounted on slides with FluorSave Reagent (Millipore) and stored at 4 °C. Images of laminin immunofluorescent staining were acquired with an epifluorescent microscope (EVOS FL Cell Imaging System; Life Technologies, U.K.), whereas images of the cell experiments were acquired with a SP5MP/FLIM inverted confocal microscope (Leica, Germany) by sequential scanning. The thickness of the acquired sample sections was about 40 μm, and z stacks of typically 20 2 μm slices were imaged.
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3

Investigating Extracellular Matrix Changes

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Normal and acellular heart biopsies were fixed in 4% formaldehyde. The paraffin sections were cut at 5-μm thickness and stained with Masson's Trichrome staining kit (Polysciences, Inc., Warrington, PA) to see the effect of surfactants on collagen arrangement in the tissue. In addition, the sections were stained for elastin, fibronectin, laminin, hyaluronic acid, and heparan sulfate (Abcam, Cambridge, United Kingdom) with the technique of immunohistochemistry.
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4

Western Blot Analysis of Exosome and Cellular Proteins

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To measure exosome proteins, total proteins extracted from cell lysates and secreted extracellular vesicles were separated by SDS-PAGE, transferred to a nitrocellulose membrane (Millipore), and blotted with anti-CD63 antibodies (1:500, Santa Cruz Biotechnology) and GM130 (1:250, BD Bioscience, San Jose, CA, USA).
To measure endogenous proteins, cell lysate proteins (10 μg) were separated by a 4–12% SDS polyacrylamide gel. The proteins were extracted by RIPA buffer (Thermo Scientific, Rockford, IL, USA), transferred to a nitrocellulose or PVDF membrane (Invitrogen), and immunoblotted using primary antibodies against ameloblastin (1:200, Santa Cruz Biotechnology), amelogenin (1:200, Santa Cruz Biotechnology), Col IV (1:400, Abcam, Cambridge, MA, USA), laminin (1:400, abcam), DSP (1:200, Santa Cruz), Bglap (1:400, Millipore), RunX2 (1:500, abcam), Rab27A (1:200, abcam), Rab27B (1:400, abcam), β-catenin (1:500, abcam), lamin B (1:500, Santa Cruz), and Gapdh (1:500, Santa Cruz).
IRDye 800CW secondary antibodies (1:10 000, LI-COR, Lincoln, NE, USA) were applied for 60 min. The signals were detected by an Odyssey Imaging System (LI-COR).
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5

Exosome Protein Profiling by WB

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Total protein of exosomes, cells, or spinal cord tissues was extracted using RIPA buffer and protein concentration was evaluated with a BCA assay according to the manufacturer’s protocol. Perform WB experiments according to the conventional process; all primary antibodies included CD9 (rabbit), CD63 (rabbit), GAPDH (rabbit), β-actin (rabbit), CTGF (rabbit), GFAP (rabbit), vimentin (rabbit), fibronectin (rabbit), laminin (rabbit), BDNF (rabbit), and TGF-β1(rabbit, Abcam, UK).
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6

Decellularization of Porcine Esophagi

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Adult porcine esophagi were donated from Mary’s Ranch, a USDA-certified slaughterhouse (Pembroke Pines, FL, USA). The decellularizing agents Triton X-100, ammonium hydroxide, trypsin, EDTA, DNase I, RNase, phosphate buffered saline (PBS), sodium deoxycholate (SD), ethylenediaminetetraacetic acid (EDTA), and dimethyl sulfoxide (DMSO) were purchased from Fisher Scientific (Waltham, MA, USA). An antibiotic/antimycotic (AA) containing penicillin, streptomycin and amphotericin-B was purchased from Gibco (Carlsbad, CA, USA). A human esophageal squamous cell carcinoma cell line (KYSE30) was purchased from Sigma-Aldrich (St. Louis, MO, USA). A human primary esophageal fibroblast cells and related culture medium were obtained from Cell Biologics Inc (Chicago, IL, USA). RPMI 1640 cell culture medium was purchased from Gibco (Carlsbad, CA, USA). Primary antibodies collagen type 1, fibronectin, laminin, and periostin were purchased from Abcam (Cambridge, MA, USA). Immunohistochemistry reagents were purchased from Vector Laboratories (Burlingame, CA, USA). The Quant-iT Pico-Green dsDNA Assay Kit was purchased from Thermo Fisher Science (Waltham, MA, USA).
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7

Protein Expression Analysis by Western Blot

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Western blot analysis was carried out with standard procedures and followed primary antibodies against Laminin (1:2000, Abcam, Cambridge, UK), HGF (1:2000, Abcam, Cambridge, UK), and Cx43 (1:1000, Sigma, St. Louis, MO, USA). IRDyeTM 800-conjugated goat anti-rabbit IgG (1:10,000, LI-COR Biosciences, Lincoln, NE, USA) was applied as secondary antibodies. Protein expression was visualized and quantified by the LI-COR Odyssey® Imaging System and Odyssey® software (LI-COR Biosciences, Lincoln, NE, USA), respectively. Results were normalized relative to β-Tubulin (1:1000; Cell Signaling, Beverly, MA, USA) expression to correct for variations in protein loading and transfer.
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8

Immunofluorescence Analysis of Lung Tissue

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Lung tissues were harvested and fixed in 4% paraformaldehyde overnight. The tissues were subsequently washed in PBS and dehydrated in in 30% sucrose overnight. The tissues were embedded in optimal-cutting-temperature (OCT) compound (Sakura Finetek) and then frozen at −80°C. Tissue blocks were cut into 20-μm-thick sections and permeabilized in cold acetone. The sections were blocked with serum-free protein block (Dako) and immunolabeled with antibodies against mouse CD3 (2A7; BioLegend), Gr-1 (RB6-8C5; BD Biosciences), CD169 (3D6-1.12; AbD Serotec), and laminin (rabbit polyclonal; Abcam). The slides were mounted with ProLong Gold antifade agent (Thermo Fisher). Images were acquired using a confocal microscope (Olympus FV3000) using a 10× and 20× (0.95-numerical-aperture [NA]) objective and processed using Imaris (v9.5; Bitplane).
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9

Immunohistochemical Analysis of Wound Healing

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The tissues of the wound site were retrieved 12 days after the treatment and embedded in an optimal cutting temperature compound (TISSUE-TEK® 4583, Sakura Finetek USA Inc., Torrance, CA, USA), followed by freezing and slicing into 10-μm thick sections at −22 °C. Immunohistochemical analysis of laminin (Abcam, Cambridge, UK) and involucrin (Abcam) was performed to examine the regeneration of the basal layer and epidermis, respectively. The staining signals for laminin and involucrin were visualized using fluorescein isothiocyanate-conjugated or rhodamine-conjugated secondary antibodies (Jackson Immuno Research Laboratories, West Grove, PA, USA), respectively. To assess the microvessel density, tissue slices were stained with antibodies against vWF (Abcam). vWF-positive signals were visualized using fluorescein isothiocyanate-conjugated secondary antibodies (Jackson Immuno Research Laboratories). The tissue slices were mounted in 4′,6-diamidino-2-phenylindole (DAPI, Vector Laboratories). A fluorescent microscope (Olympus) was used to count the microvessels. Four different images per slide from 20 random slides were randomly analyzed for each group (four different samples per group) for immunohistochemical quantification.
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10

Immunofluorescence Staining and Histological Analysis of Myobundles

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Cells were fixed in 4% paraformaldehyde in PBS for 10 min and myobundles were fixed in 2% paraformaldehyde in PBS overnight at 4°C. Following fixation, samples were washed in PBS then blocked in 5% chick serum with 0.2% Triton-X 100. The following primary antibodies were used for tissue characterization: desmin (SCBT, Dallas, TX, 1:200), anti-GFP (Life Technologies, 1:200), laminin (Abcam, Cambridge, MA, 1:200), muscle creatine kinase (SCBT, 1:100), MyoD (BD, 1:100), myogenin (SCBT, 1:100), myosin heavy chain 1/2/4/6 (SCBT, 1:100), Pax7 (DSHB, Iowa City, IA, 1:50), sarcomeric α-actinin (Sigma, 1:200), and vimentin (Sigma, 1:200). Corresponding fluorescently labeled secondary antibodies (1:200), α-bungarotoxin (1:100), and phalloidin (1:200) were purchased from Life Technologies. Oil Red O staining was performed using standard protocols on cryosections of myobundles fixed in 4% paraformaldehyde. Hematoxylin and eosin stain was performed on paraffin embedded sections of 2% paraformaldehyde fixed myobundles using Harris modified hematoxylin (Sigma) and Eosin Y (Sigma). Images were acquired using a Zeiss 510 inverted confocal microscope and analyzed using LSM Image Software. Mosaic images for fiber length measurements were generated using Mosaic J in FIJI.
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