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20 protocols using achroplan

1

Intravital Microscopy of Leukocyte Dynamics

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Intravital microscopy was performed as previously described (Phillipson et al., 2009 (link)). Exposed cremasteric muscle was superfused with 1 µM fMLP and visualized with an intravital microscope (Axiolskip; ZEISS) connected to a video camera (5100 HS; Panasonic) using 25× (0.35 N, Fluotar; Leitz) and 40× (0.80 NA, Achroplan; ZEISS) objective lenses. The same five sections of single unbranched cremasteric venules (20–40 µm in diameter) were observed for a given experiment. Adhesion, crawling, and emigration were determined during video playback. Rolling flux and rolling velocity were determined concurrently with intravital analysis of cell adhesion, crawling, and emigration. Rolling leukocytes were defined as those cells moving at a velocity less than that of erythrocytes within a chosen vessel.
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2

Mitochondria Visualization in Cells

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Occasionally, we used MitoTracker Red to visualize mitochondria. Bulk-loaded cell cultures (1 μg/mg, 20 min, 37°C) were excited at 550 nm, using the abovementioned CCD-camera imaging system and a 40x 0.8 NA water immersion objective (Zeiss Achroplan). MitoTracker emission was separated by a 570 nm dichroic mirror and a 590 nm longpass emitter, and single images were taken at an exposure time of 300 ms. Pixel binning was not applied.
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3

Cl- Sensor Expression and Fluorescence Imaging

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BV-2 cells were transfected using magnetotrasfection technique (OZ Bioscience) with cDNA of Cl-Sensor24 (link), 25 (link), 74 .
Fluorescence signals were acquired as in Bertollini et al.25 (link). Briefly, BV-2 cells expressing Cl-Sensor were visualized with an upright microscope (Axioskope) with 40x water-immersion objective (Achroplan CarlZeiss, USA) and a digital 12 bit CCD camera (SensiCam, PCO AG, Germany) and excited with a momchromator (Till Polychrome V) with a 150 W xenon lamp (Till Photonics, Germany) alternatively at 445 nm and 485 nm wavelength (50 msec, 0.1 Hz); [Cl]i changes are expressed as ratio of background subtracted F445 over F485 (F445/F485) (Supplementary Fig. S3). Peripheral hardware control, image acquisition and processing were achieved using customized software Till Vision v. 4.0 (Till Photonics); Origin 6.0 was used for offline analysis.
To induce cell depolarization and increase driving force for chloride, NES was replaced with a high K+ solution (High K+), containing (mM): NaCl 84, KCl 60, CaCl2 2, MgCl2 1, HEPES 10 (pH 7.34 with NaOH, 287 mOsm). Hypotonic stimulus was applied using a modified high K+ solution (Hypotonic High K+: 34 instead 84 mM NaCl; 205 mOsm).
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4

Electrophysiological Characterization of Prefrontal Cortex Neurons

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Electrophysiological protocols have been previously described57 and details are provided as Supplementary Information. Briefly, at CFC day 14th, the brains of 15 mice (5 mice/phenotype) were cut in 250 μm coronal sections, incubated in oxygenated ACSF, transferred to a recording chamber and submerged in continuously flowing oxygenated ACSF for electrophysiological recordings.
To study the sEPSCs using a Cs-methanesulfonate internal solution, whole-cell patch-clamp recordings in voltage clamp mode (holding potential −70 mV) were performed from mPFC pyramidal neurons, visually identified in slices using an upright infrared microscope (Axioskop 2 FS, Zeiss, Germany), a 40× water-immersion objective (Achroplan, Zeiss, Germany), and a CCD camera (Cool Snap, Photometrics, AZ, USA).
In some experiments the AMPA/Kainate receptor antagonist CNQX (10 μM) and the NMDA receptor antagonist AP-5 (50 μM) were added to the ACSF. In this condition all synaptic events were blocked, indicating that they were due to glutamatergic receptor activation57 .
Spontaneous synaptic events were analyzed off-line using the Mini Analysis Program (Synaptosoft Inc., USA). sEPSCs were manually detected using a 10 pA threshold crossing algorithm. The inter-event interval, event amplitude and kinetic parameters (rise and decay times) were compared among phenotypes.
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5

Fluorescent Microscopy of NP Internalization

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Internalization of NPs was confirmed via fluorescent microscopy using a custom upright fluorescence microscope (Mikron, San Marcos, CA) with a digital Cascade 512b camera (Photometrics, Tucson, AZ) and a 63 × water-immersion objective (Achroplan, Zeiss, NY) driven with SimplePCI 6 software. At day 6 of culture, cells were plated on a 35 mm tissue-culture dish. 24 hr later, media was removed and cells were incubated with media containing NPs at (100 μg mL−1) for 4 hr. After 4 hr, cells were subsequently washed twice with PBS and imaged.
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6

Confocal Imaging of Cellular Fluorescence

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Confocal laser scanning microscopy (CLSM) observations were carried out on a Zeiss LSM 510 microscope using a 63× (Zeiss Achroplan) objective and with 0.4 μm z-section intervals. FITC fluorescence was detected after excitation at λ = 488 nm using a cut-off dichroic mirror of 488 nm and an emission band-pass filter of 505–530 nm (green emission). Alizarin complexone fluorescence was detected after excitation at λ = 543 nm using a dichroic mirror of 543 nm, and an emission long pass filter of 585 nm (red emission).
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7

Fibroblast Live Cell Imaging Assay

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NIH 3T3 (ATCC CRL1658) and NIH 3T3 X2 (ref. 54 (link)) fibroblasts were grown under standard conditions in Dulbecco's MEM containing 3.7 NaHCO3, 4.5 D-Glucose (Biochrom), 100 Penicillin/Streptomycin (PAA), and 10% fetal bovine serum (Biochrom). Cells were mycoplasm free.
Live cell imaging was carried out on a Zeiss Axio Oberver.Z1 equipped with an incubation system at 37 °C and 5% CO2. A Zeiss Achro Plan 10 × (NA 0.25) and Zeiss Plan Apochromat 40 × (NA 0.95) were used for phase contrast and fluorescence imaging respectively in conjunction with a Zeiss AxioCam MRm camera. No PDGF was added to the cell medium in experiments with live cell imaging (except for Supplementary Fig. 5). Actin was visualized using pLifeAct-TagGFP2 (Ibidi) and Lipofectamin2000 (Invitrogen) transfection.
Confocal imaging of fixed cells was done using a Zeiss LSM 780 equipped with a Plan-Apochromat 63 × (NA 1.4) objective. Actin was stained via Rhodamin/Phalloidin (Biotium) and the nucleus with DAPI (Roche). CDRs initiated via 30 hPDGF-BB (Cell Signaling Technology) in serum-free DMEM. Cells were then fixed 20 min after stimulation using methanol/acetate (1:1).
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8

Optogenetic Manipulation of Cerebellar Purkinje Cells

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Cerebellar Purkinje cells were lesioned at 6 dpf specifically using transgenic expression of the photosensitizer, KillerRed. Larvae were mounted dorsal-up in agarose and anesthetized in MESAB. Control, transgenic larvae were anesthetized in MESAB in parallel. Larvae were randomly allocated into groups without blinding. Illumination conditions on a widefield microscope (Axio Imager M1, Zeiss, Oberkochen, Germany) were set under blue light (480/30 excitation filter from filter set 19002, Chroma Technology, VT) to visualize but not activate KillerRed. Light was focused through a 40x, 0.75NA water immersion objective (Zeiss Achroplan), stopped down to fill a 0.3 mm diameter region, and focused on the Purkinje cell somata. Green light (540/25 excitation filter from filter set 19004, Chroma Technology, VT) was then applied for 15 min, quenching KillerRed fluorescence. The power at the sample plane, measured at 540 nm with a 9.5 mm aperture silicon photodiode (PM100D power meter, S130C sensor, Thorlabs, NJ) was 14 mW. Fish were allowed to recover for 16–24 hr before behavioral measurements.
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9

Multiphoton Imaging of Tissue Microstructure

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Multiphotonic microscopy was performed using an LSM 710NLO laser-scanning microscope (Zeiss) equipped with a 20 × dry objective with numerical aperture of 0.8 (Achroplan; Zeiss). The whole tissue sections were entirely scanned by tiling (with an overlap of 10%) multiple 512 × 512 pixel frames. Each tissue section was also scanned for a Z-stack of 3 µm steps with no image average. The Chameleon Ultra Ti:Sapphire laser (Coherent) was tuned at 810 nm. Signals were collected using non-descanned detectors (Zeiss). The second harmonic generation (SHG) signal was detected through a bandwidth filter 395 to 425 nm of a non-descanned detector in a backscattering geometry. Simultaneously, the retinoid fluorescence (RF) signal was detected through a bandwidth filter 500 to 550 nm of a non-descanned detector in a backscattering geometry. The quantitative analysis of multiphoton microscopy images was made through a home-made automated image analysis workflow implemented in Fiji (NIH, Bethesda, MD, USA) environment as a macro.
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10

Confocal Imaging of Cellular Fluorescence

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Confocal laser scanning microscopy (CLSM) observations were carried out on a Zeiss LSM 510 microscope using a 63× (Zeiss Achroplan) objective and with 0.4 μm z-section intervals. FITC fluorescence was detected after excitation at λ = 488 nm using a cut-off dichroic mirror of 488 nm and an emission band-pass filter of 505–530 nm (green emission). Alizarin complexone fluorescence was detected after excitation at λ = 543 nm using a dichroic mirror of 543 nm, and an emission long pass filter of 585 nm (red emission).
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